Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.4  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    21   7.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 487 T*W*VVTVAHGLQCQGQSQAAVYRKYNYRNN 395
           T W ++ V  G+ CQ  + AAV  +    NN
Sbjct: 2   TKWLLLVVCLGIACQDVTSAAVNHQRKSANN 32


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 489 PPDGEWLPSLMDF-NARGRAKPLSTVNIII 403
           PPD  W P ++ F NA G  +     N++I
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYKSNVLI 133



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 341 PPDGKWSPSLMDVSNGKGD 285
           PPD  W P ++  +N  G+
Sbjct: 104 PPDKVWKPDIVLFNNADGN 122


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 489 PPDGEWLPSLMDFN 448
           PP  + LP L+DFN
Sbjct: 3   PPSKQGLPVLVDFN 16


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 487 T*W*VVTVAHGLQCQGQSQAAV 422
           T W ++ V  G+ CQ  + AAV
Sbjct: 2   TKWLLLVVCLGIACQDVTSAAV 23


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = -2

Query: 358 ADERTAHLMVSGHRRSWTSAMVRGTAKPLPTIKCFIYC 245
           A+++   +   G  ++    + +G     P+I C++YC
Sbjct: 39  AEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYC 76


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = -2

Query: 358 ADERTAHLMVSGHRRSWTSAMVRGTAKPLPTIKCFIYC 245
           A+++   +   G  ++    + +G     P+I C++YC
Sbjct: 39  AEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYC 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,491
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)