Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   1.7  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   1.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.2  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   6.8  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   6.8  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   9.0  

>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 249 SMRRWLEHREQSMSRKMVIHERL--WTSKKILRKQLEKWSWSQPEMQHKRTMVQWRTNML 76
           ++ +++E R++ M  ++  +ERL  W    I R+  E+ S    E+Q  R + +W    L
Sbjct: 48  ALEKYIEERDRKMKYEIECNERLQGWKKLAIEREISEEQS---GEVQFPRWIDEWANTKL 104

Query: 75  G 73
           G
Sbjct: 105 G 105


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 249 SMRRWLEHREQSMSRKMVIHERL--WTSKKILRKQLEKWSWSQPEMQHKRTMVQWRTNML 76
           ++ +++E R++ M  ++  +ERL  W    I R+  E+ S    E+Q  R + +W    L
Sbjct: 48  ALEKYIEERDRKMKYEIECNERLQGWKKLAIEREISEEQS---GEVQFPRWIDEWANTKL 104

Query: 75  G 73
           G
Sbjct: 105 G 105


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 285  RSTSQLRV*RGRSMRRWLEHREQSMSRKMVI 193
            +STSQ R  RG+S+   L  R+ SMS K+ I
Sbjct: 1942 KSTSQKRSLRGKSILNVLHSRKLSMSSKVDI 1972


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 171 KKILRKQLEKWSWSQPEMQ--HKRTMVQWRTNMLGQ*HMSMLVQQHKRR 31
           K +L+ QL K   SQ      H+R  + W+ N+       ML Q H+ +
Sbjct: 331 KLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 183 LWTSKKILRKQLEKWSWSQP 124
           LWT +KI+    E +SW  P
Sbjct: 102 LWTDEKIMSFMNENYSWFMP 121


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 213 YSAHGAPAIAAYSAHATPAVATYS 284
           +S +  P  ++YSA  T +VA+YS
Sbjct: 138 FSCNSFPEYSSYSASETSSVASYS 161


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 140 HFSSCFLSIFLLVH---NRSWITIFRDILCSRCS 232
           ++ + FL + L+ H   + SWI    D++ +RCS
Sbjct: 270 YYDTFFLPMPLISHPLYSSSWIPTLHDLVSTRCS 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,536
Number of Sequences: 5004
Number of extensions: 23521
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)