Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315A07f
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 145 4e-36
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 104 9e-24
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 97 1e-21
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 91 1e-19
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 88 6e-19
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 85 6e-18
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 68 9e-13
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 60 2e-10
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 46 2e-06
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 3.7
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 4.8
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 4.8
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 6.4
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 145 bits (351), Expect = 4e-36
Identities = 75/130 (57%), Positives = 91/130 (70%)
Frame = +2
Query: 62 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 241
+SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 242 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTXXXXXXXXXXXKLIEQKLH 421
VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV ++ K+H
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118
Query: 422 PQTIIAGWRI 451
PQ II G+RI
Sbjct: 119 PQVIIDGYRI 128
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 104 bits (249), Expect = 9e-24
Identities = 51/109 (46%), Positives = 74/109 (67%)
Frame = +2
Query: 125 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 304
R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 305 LVDMSKVQDEEVGDGTTSVTXXXXXXXXXXXKLIEQKLHPQTIIAGWRI 451
LV++++ QD+EVGDGTTSV +L++ K+HP TII G+R+
Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRL 128
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 97.1 bits (231), Expect = 1e-21
Identities = 50/105 (47%), Positives = 73/105 (69%)
Frame = +2
Query: 125 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 304
R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 305 LVDMSKVQDEEVGDGTTSVTXXXXXXXXXXXKLIEQKLHPQTIIA 439
LVD+S QD E GDGTTSV KL+++ +HP T+IA
Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHP-TVIA 121
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 90.6 bits (215), Expect = 1e-19
Identities = 46/125 (36%), Positives = 71/125 (56%)
Frame = +2
Query: 74 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 253
P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 254 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTXXXXXXXXXXXKLIEQKLHPQTI 433
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV +E + I
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 434 IAGWR 448
I G+R
Sbjct: 126 IRGYR 130
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 88.2 bits (209), Expect = 6e-19
Identities = 43/105 (40%), Positives = 66/105 (62%)
Frame = +2
Query: 131 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 310
S + + ++V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+LV
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 311 DMSKVQDEEVGDGTTSVTXXXXXXXXXXXKLIEQKLHPQTIIAGW 445
+SK QD+E+GDGTT V LI++ +HP I G+
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 85.0 bits (201), Expect = 6e-18
Identities = 43/126 (34%), Positives = 73/126 (57%)
Frame = +2
Query: 71 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 250
+P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 251 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTXXXXXXXXXXXKLIEQKLHPQT 430
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV L+++K+HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 431 IIAGWR 448
+I ++
Sbjct: 120 MIRSFK 125
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 67.7 bits (158), Expect = 9e-13
Identities = 35/102 (34%), Positives = 52/102 (50%)
Frame = +2
Query: 146 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 325
AI + D++KS LGP G K+LV +G +++T DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 326 QDEEVGDGTTSVTXXXXXXXXXXXKLIEQKLHPQTIIAGWRI 451
QD+ GDGTTSV I + LHP I G+ +
Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNL 123
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 59.7 bits (138), Expect = 2e-10
Identities = 31/99 (31%), Positives = 55/99 (55%)
Frame = +2
Query: 155 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 334
+ ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 335 EVGDGTTSVTXXXXXXXXXXXKLIEQKLHPQTIIAGWRI 451
E+GD V +I L P I G+ +
Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEM 133
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 46.4 bits (105), Expect = 2e-06
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +2
Query: 125 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 292
R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 293 AAKILVDMSKVQDEEVGDGTTSVT 364
A+++ D++ +E GDGTT+ T
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTAT 124
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 3.7
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +2
Query: 149 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQ 328
IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ
Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379
Query: 329 DEEVGD 346
++ D
Sbjct: 380 PDDAND 385
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 155 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 277
+G++ LGP I+ +CG ++ V+ A + + I
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 279 PIDFNIVAPSFVTST*PEFLPQETKILSIP 190
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 226 VPPAGN*DLIHSFGT*STLYQISYGNSTD 140
V P + L+H +G T YQ YG + D
Sbjct: 308 VVPGTSVPLVHDYGASGTGYQAGYGMALD 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,204
Number of Sequences: 5004
Number of extensions: 31642
Number of successful extensions: 73
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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