Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315A05f
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 27 1.3
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 27 1.7
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 2.2
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 2.9
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 3.8
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 3.8
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 25 5.1
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 25 5.1
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 25 6.7
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 8.9
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 8.9
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = +2
Query: 269 FAPDFKFDDESFLISEDENFLEEKVPSLAKWNESDPRALSNVIFELVNLYKSHQ 430
F P+ + S + +++E + +WN+ AL N I L+ ++ + Q
Sbjct: 628 FTPENQLSLRSMACEKAASYIENLILYKIQWNDYGAMALENDISSLITIFSNDQ 681
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 218 CSKKLKWEILFDVSIPWFAPDFKFDDESFLISEDENFLEEKVPS 349
C+K +LF P F + F+D SF + ++F+E+K PS
Sbjct: 199 CTKNYYTRLLF----PEFPNVYAFNDLSFHFHDAQSFVEKKQPS 238
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 191 CQFRLLLPYCSKKLKWEILFDVSIPWFAPDFKFDDESFL 307
C FR+LL Y ++ WE+L + F +D F+
Sbjct: 604 CFFRMLLIYFKREFDWEVLLKLWDVLFTNYLSYDYHIFV 642
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 296 ESFLISEDENFLEEKVPSLAKWNES 370
E L DEN L +L+KWNE+
Sbjct: 18 EIILAHSDENLLSRTKNNLSKWNEN 42
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -1
Query: 242 FPISIS*NNKVIADGIGIPLHQVNKIFFQH 153
F + + +K+ + IPLHQ +F H
Sbjct: 415 FAVPLKEEHKIFLSKVLIPLHQTKSVFLYH 444
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 290 DDESFLISEDENFLEEKVPS 349
DD S +++EDEN + +++PS
Sbjct: 377 DDMSNVVNEDENLIIDEIPS 396
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +2
Query: 92 RPYVQTLCEELKLGLCKTKIDVERISCLPDGEECQFRLLLPYCSKKLKWEIL 247
RP + K I + LP GE+ ++ P +K++ W++L
Sbjct: 171 RPVEEVFASIEKRAAASASIAQVHRAVLPSGEKVAVKIQKPDVAKQMSWDLL 222
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 206 LLPYCSKKLKWEILFDVSIPWF 271
L P K L +++ F+V IPWF
Sbjct: 197 LNPRLGKLLDFKMFFEVRIPWF 218
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 68 FKNLSPAFRPYVQTLCEELKLGLCKTKIDVE 160
+KN+ +R V+ +CE + + LC K+DV+
Sbjct: 97 YKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 345 QALLNGMKVILEL*VM*YLSWSICTKVISIEENPALTQHCY**DIQLDKR 494
Q +N +K ++L Y+ W++ + S + QHCY + L++R
Sbjct: 913 QVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLLLNER 962
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 293 DESFLISEDENFL--EEKVPSLAKWNESDPRA 382
D F+ISED+++L E+K A N +D ++
Sbjct: 12 DSDFIISEDQSYLSKEKKADGSATINTADEQS 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,140
Number of Sequences: 5004
Number of extensions: 44239
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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