Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315A03f
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.014
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.057
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.10 
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   3.8  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              27   5.0  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             27   6.6  
SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)            27   6.6  

>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +2

Query: 176 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFXDNH 337
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.057
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 196 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 318
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 188 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFXDNH 337
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +1

Query: 112 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRL--MLSERRPRMQTD 285
           R + RH ++   +F R+ H  NR++Y+G  ++ C++     G+      LS R   MQ  
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIAIGRTLGKSGYPQRLSGRLSVMQAA 423

Query: 286 FKSAALQRV-LRPIQXQPRCSER 351
              A  +   LR +    RC E+
Sbjct: 424 ICRADCRLCKLRFVGTLLRCEEK 446


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 187 YEGVCSHRCLSGSGCAGRGRLML 255
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 164 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCN 30
           R L+ + SA  VC +YCLY  W R R  ++  +   + T  TD N
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRARNKSLQDI-TTMFTPHTDWN 141


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 164 RILEKITSAFDVCRKYCLYTHWRRRR 87
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 164 RILEKITSAFDVCRKYCLYTHWRRRR 87
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)
          Length = 590

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 134 DVCRKYCLYTHWR-----RRRLPTMTRLDENVRTKTTDCNLF 24
           D+    CL T  R     RRRLP   RL +    +T D NLF
Sbjct: 76  DIINDNCLLTLSRANQELRRRLPLKPRLHDRTVARTLDGNLF 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,319
Number of Sequences: 59808
Number of extensions: 251775
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)