Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315A03f
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   7.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 244 RLMLSERRPRMQTDFKSAAL 303
           RL   +RR RM+ D+K  AL
Sbjct: 407 RLAEQDRRERMEFDWKQVAL 426


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 413 VEPTGDNGRNVSNTVRLMXSVRSLQR 336
           + P+G+N  +    VR+   VRS+ +
Sbjct: 47  IRPSGENATDGPAVVRVNIFVRSISK 72


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 156 RKNNKCV*RMSKVLPLHTLAQKAT 85
           R +N    R+SKV+  HT+  K T
Sbjct: 5   RLSNVATFRLSKVMLDHTINSKKT 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,396
Number of Sequences: 438
Number of extensions: 2295
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)