Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   6.8  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   6.8  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    25   9.0  

>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 268 DNSSGHYY**IIDRKHRPSYRTCEIKFQKNYS 173
           DN   + Y   I+R H PS     IK  KNY+
Sbjct: 56  DNGKLYLYMKTIERAHFPSKLWQRIKLSKNYA 87


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 371 HSTYKHSLFYSIAHLFKGFMIFRFVTH 291
           H T KHSL YSI  +      F   T+
Sbjct: 307 HETIKHSLTYSIVEVALSLFTFALFTN 333


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 279 KSKTMGYKTKNHKAFK*MSDRIKETM 356
           KS T+G +TKN  A K + D + E++
Sbjct: 150 KSITIGVQTKNVYAIKSLMDNLSESL 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,421
Number of Sequences: 5004
Number of extensions: 30025
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)