Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    29   0.56 
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    28   0.73 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    28   0.97 
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    27   1.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.7  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    27   1.7  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   3.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.0  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    26   3.9  
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    25   5.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   6.8  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   9.0  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 349 SKTLTVRSGSTVKLACNVLYGNPAPSLKWKFI 254
           S+ L VR GST++  CN ++   A  LK+  +
Sbjct: 303 SEALIVRKGSTIEQVCNRIHRTLAEQLKYALV 334


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 448 NLSTTQ*IYVYSDHL*RVFDP 510
           NLS     Y Y DH+ R+FDP
Sbjct: 185 NLSLLDNFYYYQDHIDRIFDP 205


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 328 SGSTVKLACNVLYGNPAPSLKWKFINKDSTSRLL 227
           S     L   V Y NP PSL W  ++ DS   L+
Sbjct: 69  SNKQASLESPVSYSNPIPSLTWLSLDGDSPDSLV 102


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 198 KVNELVLLFLS-SLDV-ESLFMNFHFKDGAGLPYRTLHASLTVEPERTVN 341
           K + L++ F S S+++ E LF +  F+ G+G   R   A++  + E+TVN
Sbjct: 158 KGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVN 207


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 400 KTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGN 284
           K  ++++L+APY   P+S+ + +++ +T K     L GN
Sbjct: 694 KLDVLSILIAPYKSLPRSRYMGIQAINTNKCKLAFLSGN 732


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -2

Query: 439 YHCIAENALGTAKKTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLKWK 260
           + C     +G   + IL+  L A   +TP S TLT  + S   +  +VL  +  PSL+ +
Sbjct: 86  HDCPTTKGIGYFLEPILILCLFA---KTPTSLTLTGVTSSNEDIGVDVLRTSVLPSLQKR 142

Query: 259 F-INKDSTSRLLR 224
           F +  +   R+L+
Sbjct: 143 FQVGDELELRILK 155


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 367 YIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLK 266
           Y++  Q      R+ ST K+A   +Y N AP+LK
Sbjct: 339 YLKRYQKTKTKTRAKSTWKIANKSVYSNLAPTLK 372


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 407 SKENHSSKCLSGPIHRNTTVKNIDS 333
           S + H SK LS  IH  +T KN+DS
Sbjct: 320 STKVHPSKKLSVYIHHGSTKKNLDS 344


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 514 PLDQRHVTDDQNTHRFTALWRD 449
           PL  R+ +D  + H FT  WRD
Sbjct: 25  PLGLRYRSDASSLHLFTPTWRD 46


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 508 DQRHVTDDQNTHRFTALWRDSGHYH 434
           D+R V++ +NT    ++ RDS +YH
Sbjct: 123 DERLVSNIKNTQTKDSITRDSAYYH 147


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 288 PYRTLHASLTVEPERTVNVFDCGVSMYGATK 380
           PYR    +   E E   NVFDC  S+   TK
Sbjct: 298 PYRLRDPTQGSEEEMMENVFDCLCSLVQETK 328


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 449 FRSLSLYCRKCPGNSKENHSSKCLSGP-IHRNTTVKNIDSSFRLNCQTSVQRS 294
           F +   +CR C G      SSK LS P +  N  V+  DS + L  +    +S
Sbjct: 185 FTNRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCYSLRTKPKGSKS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,946
Number of Sequences: 5004
Number of extensions: 35880
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)