Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314H11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 29 1.7
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052... 29 1.7
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 29 3.0
04_04_0936 + 29512562-29512576,29513009-29513336,29514117-295142... 28 5.2
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413 27 6.9
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 27 6.9
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642... 27 6.9
01_03_0306 + 14875755-14876822 27 6.9
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 27 9.1
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 379 RHLLEWFSLLFPGHFRQYSDND 444
+ +L+W LFPGH + Y +ND
Sbjct: 108 QRMLDWIRDLFPGHVKFYVEND 129
>02_03_0135 -
15602404-15602850,15603332-15603588,15605095-15605200,
15605500-15605630,15606159-15606223,15606345-15606409,
15606560-15606955
Length = 488
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 271 LKWKFINKDSTSRLLRNNRTSSLTLNNVNK-LNEGSYMCIV-DNALG 137
LKW ++ S S LRNNR SL +N N ++ Y ++ N+LG
Sbjct: 266 LKWNELDPPSRSEQLRNNRVCSLYQHNRNPFVDHPEYANLIWGNSLG 312
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 452 RFRSLSLYCRKCPGNSKENHSSKCLSGPIHRNTTVKNIDSSFRLNCQTSVQRSIR 288
R + SL C GN H +C++ +++V ID+S +L+C++ V +R
Sbjct: 201 RIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDAS-KLDCKSRVAALLR 254
>04_04_0936 +
29512562-29512576,29513009-29513336,29514117-29514245,
29514451-29514965
Length = 328
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 268 KWKFINKDSTSRLLRNNRTSSLTLNNVNKLNEGSYMCIVDNALGSDRI 125
+W+FI + STSR L + T + N++ + + N L + R+
Sbjct: 180 QWEFIGESSTSRDLEGLNEDTATHDKTNQVVDADANSVASNPLPNGRM 227
>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
Length = 677
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 171 PSFNLLTLFKVNELVLLFLSSLDVESLFMNF 263
P NLL+ K ++L+F +S D+E++ NF
Sbjct: 636 PFGNLLSKAKALRVILMFNASYDMENMLRNF 666
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -2
Query: 355 PQSKTLTVRSGSTVKLA---CNVLYGNPAPSLKWKFINKDSTSRLLRNNR 215
P K T+R G+ V+L CN + G + S ++N + ++LR R
Sbjct: 71 PLVKDATLRPGTVVQLTDFMCNTIQGKRSNSHSSLYVNMGDSEKVLRKMR 120
>04_03_0899 +
20662671-20662818,20663655-20663959,20664080-20664265,
20665200-20665274,20665596-20665652
Length = 256
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 174 SFNLLTLFKVNELVLLFLSSLDVESLFMNFHFKDGAGLP 290
S+NL LF NE L +S +VES F + GLP
Sbjct: 56 SWNLRRLFSSNEKHLPAISDPEVESAFKDLMAASWTGLP 94
>01_03_0306 + 14875755-14876822
Length = 355
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 395 GFLC-CSQGIFGNTVIMTGISPQRSESMC 478
G+LC CS+G GN + G + + S S+C
Sbjct: 273 GYLCNCSEGYQGNPYLPDGCTGKFSSSLC 301
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 274 SLKWKFINKDSTSRLLRNNRTSSLTLNNVNKLNEGSY 164
SLKW F K ST+ +++ + NN +N G++
Sbjct: 1440 SLKWSFSLKPSTTEPVKHQQNIQAVSNNSPTVNVGAH 1476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,571,036
Number of Sequences: 37544
Number of extensions: 211752
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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