Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15233.1 68417.m02334 ABC transporter family protein similar ...    28   3.3  
At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / ...    28   3.3  
At4g25150.1 68417.m03620 acid phosphatase, putative similar to a...    27   5.8  
At5g48370.1 68418.m05976 thioesterase family protein similar to ...    27   7.7  
At3g23590.1 68416.m02967 expressed protein                             27   7.7  
At3g17640.1 68416.m02253 leucine-rich repeat family protein cont...    27   7.7  

>At4g15233.1 68417.m02334 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1168

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 316 VKLACNVLYGNPAPSLKWKFINKDSTSRLLRNNRTSSLTL 197
           V+  C V+YG P P+L W  I+    SR + +N+   +++
Sbjct: 116 VEAECEVVYGKPIPTL-WNAIS-SKLSRFMCSNQAKKISI 153


>At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein /
            carbohydrate-binding domain-containing protein similar to
            GB:AAD27896 to endoxylanases gi|1255238
            (Thermoanaerobacterium thermosulfurigenes), gi|1813595
            (Hordeum vulgare) and others ; contains Pfam profiles
            PF00331: Glycosyl hydrolase family 10, PF02018:
            Carbohydrate binding domain
          Length = 1063

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 198  KVNELVLLFLSSLDVESLFMNFHFKDGAGLPYRTLHASLTVE 323
            +VNE    FL        F++   +DG GL +R  H S TVE
Sbjct: 995  EVNEAGKRFLEIKREWLSFVDGEIEDGGGLEFRGYHGSYTVE 1036


>At4g25150.1 68417.m03620 acid phosphatase, putative similar to acid
           phosphatase-1(1); Apase-1(1) [Lycopersicon esculentum]
           GI:7705154, acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 260

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 407 SKENHSSKCLSGPIHRNTTVKNIDSSFRLNC 315
           S EN SS  ++ P+   T +KNI+ +  L+C
Sbjct: 18  SNENSSSYLIARPLIFETQLKNINDNVNLHC 48


>At5g48370.1 68418.m05976 thioesterase family protein similar to
           SP|Q9R0X4 48 kDa acyl-CoA thioester hydrolase,
           mitochondrial precursor (EC 3.1.2.-) {Mus musculus};
           contains Pfam profile PF03061: thioesterase family
           protein
          Length = 438

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 478 THRFTALWRDSGHYHCIAENALGTAKKTILVNVLVAPYIETPQSKTLT 335
           T +  +LW   G YH     AL  A+  I  ++L  P    PQS+ LT
Sbjct: 23  TRKPLSLW--PGMYHSPVTTALWEARSKIFESLLDPPKDAPPQSQLLT 68


>At3g23590.1 68416.m02967 expressed protein 
          Length = 1309

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 253  NKDSTSRLLRNNRTSSLTLNNVNKLNEGSYMCIVDNALGS 134
            N+D+  +LLRN  +++L LN     N+G    ++ +  GS
Sbjct: 1017 NQDAVIQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGS 1056


>At3g17640.1 68416.m02253 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to
           receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 396

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 244 STSRLLRNNRTSSLTLNNVNKLNEGSYMCIVDNALGSD 131
           ST  L RNN TS  T N  + L EGS + +  N++  +
Sbjct: 254 STMFLQRNNFTSIATSNATSLLPEGSIVDLSHNSISGE 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,631,598
Number of Sequences: 28952
Number of extensions: 179208
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)