Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314H10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 54 2e-08
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 27 1.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 3.9
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 3.9
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 5.2
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 6.8
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 25 6.8
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 9.0
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 53.6 bits (123), Expect = 2e-08
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Frame = +3
Query: 138 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELG 317
LN +S + KFYST+S + + E SK + LNRPK LNA+ + +
Sbjct: 33 LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAINVDMIDSIL 89
Query: 318 KAVNDFDADSNIA-AIIITGNEKAFAAGADIKEMQNNTYSS---NTKQGFLREW---EDI 476
+ + +SN+A II+ GN ++F++G DIK + + F +E+ +
Sbjct: 90 PKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTL 148
Query: 477 SNCGKPIIAAVNG 515
+ KP++A +NG
Sbjct: 149 ATYQKPVVALMNG 161
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 98 CRYCNSCFA-GKECTEQVQSGIRNKPSIYKVL 190
C+ CNS GK C+ + + R PSI +VL
Sbjct: 59 CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 457 RKPCFVLLLYVLFCISLISAP 395
RKP F LLY ++ +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 408 KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 515
K M+++ S N K F ++ WED+ +C K + NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 309 ELGKAVNDFDADSNI-AAIIITGNEK---AFAAGADIKEMQNNTYSSNTKQGFLREWED 473
EL + ++++ S I A+ + N K +F IKE++ TY+ Q E++D
Sbjct: 11 ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQD 69
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 420 NNTYSS--NTK-QGFLREWEDISNCGKPIIAAV 509
NNT+ + N K +G+++E E +SN K + AAV
Sbjct: 85 NNTFQNPCNRKIEGYIKEIERLSNSNKNLQAAV 117
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 207 ENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEK 383
ENI V ++N LI+ +++ K + G+ +ND+D S + G EK
Sbjct: 55 ENITRTFVELQENYRLIEKIGEGTFSSVYKAEDLHYGRYINDWDIQSEVLKESSFGKEK 113
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 165 TSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVN 329
TSQ +K S E+I ++VVG N ++ + + L K GK++N
Sbjct: 24 TSQQDVK----PSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMN 74
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = -1
Query: 461 AKETLFCVAAVCIVLHLLNISTSRKSLLVTSDDDGSNVAVGVKIIDCLPEFNKQWF 294
A + +F + V+H + +S+ V +N++ + +I+C+ ++N + F
Sbjct: 70 ALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLIECMKKYNVRDF 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,841
Number of Sequences: 5004
Number of extensions: 42919
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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