Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 490 FPQLEMSSHSRRKPCFVLLLYVLFCISLISAPAAKAF 380
           +P +      RR+P F +   +L CI LI++ A   F
Sbjct: 200 YPDITYEIRLRRRPMFYVFNLILPCI-LINSVALLVF 235


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 396 GADIKEMQNNTYSSNTKQ 449
           GA++KE+  NT+  N  Q
Sbjct: 402 GANVKELIRNTHCVNNNQ 419


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 401 STSRKSLLVTSDDDGSNVAVGVKIIDCLPEFNK 303
           S S + +L+T+ ++G+N      + +CL    K
Sbjct: 461 SNSNQFILMTTVNEGNNNMAATYMNECLLNIQK 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,402
Number of Sequences: 438
Number of extensions: 2943
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)