Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H08f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   3.0  
UniRef50_A3XW70 Cluster: Putative uncharacterized protein; n=3; ...    33   5.2  
UniRef50_Q98DH8 Cluster: Sensor protein; n=1; Mesorhizobium loti...    32   6.9  
UniRef50_O46329 Cluster: Plasmid Gle4293, complete sequence; n=1...    32   6.9  
UniRef50_Q8T107 Cluster: Putative uncharacterized protein Bmhig;...    32   6.9  
UniRef50_Q7R558 Cluster: GLP_587_120234_120485; n=1; Giardia lam...    32   6.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -3

Query: 375 WWYLPVRTHKMSY 337
           WWYLP RTHK SY
Sbjct: 571 WWYLPARTHKRSY 583


>UniRef50_A3XW70 Cluster: Putative uncharacterized protein; n=3;
           Vibrionaceae|Rep: Putative uncharacterized protein -
           Vibrio sp. MED222
          Length = 175

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 216 DVIIFNNIVNWEKRVNMWGTKLDNVHLYL-ILNVKTE 323
           D +IF  I++WE R   W  K D V + + +++VKT+
Sbjct: 100 DYLIFPTILHWEDRATEWSAKPDKVSVKITVVDVKTK 136


>UniRef50_Q98DH8 Cluster: Sensor protein; n=1; Mesorhizobium
           loti|Rep: Sensor protein - Rhizobium loti (Mesorhizobium
           loti)
          Length = 535

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = -2

Query: 187 YFQQIQREQWVGGSTIHLALQMSISDGTHLLCRS 86
           YF+   R+ WVGG TI L LQ    DGT LL RS
Sbjct: 161 YFEAFYRQLWVGGGTIALLLQ----DGT-LLARS 189


>UniRef50_O46329 Cluster: Plasmid Gle4293, complete sequence; n=1;
           Gracilariopsis lemaneiformis|Rep: Plasmid Gle4293,
           complete sequence - Gracilariopsis lemaneiformis
          Length = 418

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 237 IVNWEKRVNMWGTKLDNVHLYLILNVK-TEYFT 332
           +VNW+  VN+  TKL   + Y  LNVK + YFT
Sbjct: 315 LVNWQSFVNLPNTKLRLFYFYFGLNVKVSNYFT 347


>UniRef50_Q8T107 Cluster: Putative uncharacterized protein Bmhig;
           n=1; Bombyx mori|Rep: Putative uncharacterized protein
           Bmhig - Bombyx mori (Silk moth)
          Length = 786

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +2

Query: 380 SPYSFTVEINREHLVSTYFVRKTGTCLRDSNTGASLHTNAPDVLS 514
           +P +   + NR  L+STYF+R           GASL+TNAPD LS
Sbjct: 377 TPGNVYFKFNRGRLLSTYFIRN----------GASLNTNAPDDLS 411


>UniRef50_Q7R558 Cluster: GLP_587_120234_120485; n=1; Giardia
           lamblia ATCC 50803|Rep: GLP_587_120234_120485 - Giardia
           lamblia ATCC 50803
          Length = 83

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 52  YRLLPSCFIIFPTYIIGECRH 114
           YRL+  C +++PT+++ +CRH
Sbjct: 34  YRLILVCIVVWPTWVLTDCRH 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,897,317
Number of Sequences: 1657284
Number of extensions: 10770569
Number of successful extensions: 20309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20306
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)