Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    27   2.2  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.0  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    25   9.0  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 261 NMWGTKLDNVHLYLILNVKTEYFTGRRTSCESARVGTTTLHPIPS 395
           N +   LDN  LYL+  ++ ++ T  R       V  T+  P+ S
Sbjct: 110 NFYNVLLDNHRLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDS 154


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 178 QIQREQWVGGSTIHL 134
           Q Q E W+G STIHL
Sbjct: 362 QEQSETWIGSSTIHL 376


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 117 LVTALTYYVGRKNYKTTW 64
           LV  L++YV R NYK  W
Sbjct: 715 LVYLLSFYVERDNYKLLW 732


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 508 DVRCIRM*RCTGVRIPQAGTSFSNEIRTY 422
           D   IR    T  R   AG  F NE++TY
Sbjct: 514 DPESIRFYSSTTARTRSAGQPFDNEVQTY 542


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 366 GTTTLHPIPSPWKSI 410
           G+ T  P PSPWKS+
Sbjct: 616 GSQTTAPKPSPWKSL 630


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 365 RYHHPSPYSFTVEINREHLVSTYFVRKTGT 454
           +YH   PYS    I++EHL +   +  T T
Sbjct: 126 KYHSRKPYSEPSVIDKEHLQNRVSIGTTHT 155


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 359 TGRYHHPSPYSFTVEINREHLVSTYFVRKTGTCLRDSNT 475
           T  Y  P PYSF   +++    +++ + K    L+ +NT
Sbjct: 32  TSIYKAPPPYSFVAGLSKNTSSNSFVIHKCLPPLQRNNT 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,301
Number of Sequences: 5004
Number of extensions: 46981
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)