Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0284 + 11599390-11600007,11600109-11600153,11600343-116005...    32   0.24 
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    29   1.7  
03_03_0012 + 13737898-13740031,13740347-13740486                       27   9.1  

>05_03_0284 +
           11599390-11600007,11600109-11600153,11600343-11600550,
           11600645-11600726,11601894-11602398
          Length = 485

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -3

Query: 477 PVFESRRQVPVFLTKYVLTKCSRLISTVKE*GEGWWYLPVRTHK 346
           P  ++RRQ  VF     LT   R   T++  GEGWW LP + H+
Sbjct: 165 PPSDNRRQWLVFSNLDGLTL--RGAGTIEGNGEGWWNLPCKPHR 206


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 477 PVFESRRQVPVFLTKYVLTKCSRLISTVKE*GEGWWYLPVRTHK 346
           P  + RRQ  VF     +T   +   T++  GE WW LP + H+
Sbjct: 401 PAADGRRQWIVFYRADGMTLSGK--GTIEGNGEEWWNLPCKPHR 442


>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 256 LFSQLTMLLKIITSKIIFILT*SYFQQIQREQW 158
           LFS L   L  I S+++ IL   Y +Q+ RE W
Sbjct: 453 LFSTLGGFLYQIYSRLLGILGLQYIEQVFREMW 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,253,096
Number of Sequences: 37544
Number of extensions: 290107
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)