Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H08f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse t...    23   4.7  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.2  

>AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 129

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 356 GLTRCPTTSKILSLDIQY*IQMNII*FGTPHVYSFFP 246
           G+T  P+ +K+  + IQ  +  +   + + H + FFP
Sbjct: 4   GITTLPSCAKVYEIVIQNSLMYHCRSYISTHQHGFFP 40


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 403 FHGEGIG*RVVVPTRADSQDVLRPVKYSVLTFN 305
           F G G     V+     S++++RP  +SV+ F+
Sbjct: 226 FIGRGFAASSVIDVSFASREIVRPDTWSVIPFS 258


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,712
Number of Sequences: 2352
Number of extensions: 11727
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)