Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   1.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.8  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 353 VRTGRYHHPSPYSFTVEINREHLVS 427
           ++TG Y +PSP   TV    ++L++
Sbjct: 124 IKTGSYDYPSPEWDTVTPEAKNLIN 148


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 262 FTLFSQLTMLLKIITSKIIFILT*SYFQQIQREQWV 155
           F  +  L MLL ++ + II  +  S+F      +W+
Sbjct: 87  FRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 262 FTLFSQLTMLLKIITSKIIFILT*SYFQQIQREQWV 155
           F  +  L MLL ++ + II  +  S+F      +W+
Sbjct: 87  FRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 262 FTLFSQLTMLLKIITSKIIFILT*SYFQQIQREQWV 155
           F  +  L MLL ++ + II  +  S+F      +W+
Sbjct: 87  FRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 368 YHHPSPYSFTVEINREHLVSTYFVRKTGTCLRDSN 472
           +H P P ++  +++      T+  R +GT L+D N
Sbjct: 263 WHEPIPEAYFPKLDSLVASRTWPFRPSGTVLKDIN 297


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 382 TLFLHRGNQSRTFGKYVFR 438
           TL +HRG  + T  +++FR
Sbjct: 257 TLRIHRGGGTNTDARHLFR 275


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 359 TGRYHHPSPYSFTVEINREHLVSTY 433
           TGR H P+ +  +  I+R    +TY
Sbjct: 398 TGREHDPAKFPPSFRISRVAAYNTY 422


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 195 VKIKIILDVIIFNNIVNWEKRVNMW 269
           VKIK+ L  +I  N+ N     N+W
Sbjct: 52  VKIKLKLSQLIDVNLKNQIMTTNLW 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,870
Number of Sequences: 438
Number of extensions: 3905
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)