Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 424 AESGQTQVPEYSSK*RPAVHLTSVASP 344
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 202 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 113
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 202 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 113
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 304 GWAKNPLRRGHCELGLGGWSSVLSPQSTLKGWSHLLIFLIVGSNTR 167
           GW+   L     E  + G  SV    + +KG+    + L V +N R
Sbjct: 377 GWSARGLVSDGNEAEVEGTLSVQPQANPVKGFEEYFLNLTVENNRR 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.123    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,650
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)