Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H02f
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   0.56 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   2.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   3.0  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   3.9  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    25   5.2  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    24   6.9  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    24   9.1  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 207 FRANNGTSTGTTEKNGMWKP--FVYCFHIRLCLC 112
           + +++ T+    E+   W+   F+ C HIR C+C
Sbjct: 29  YDSDSPTTVHHDERKESWRSHGFIVCLHIRCCIC 62


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 61  NDIPDLKQKSALVTTEITKTQSDVK 135
           + + D K  +A++++E+TK+  DVK
Sbjct: 738 SSLSDAKNTNAILSSELTKSSEDVK 762


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -1

Query: 264 GQYVMTVREQCAVSRSEDPFRANNGTSTGTTEKNGMWKPFVYCFHIRL--CLC 112
           G +   VR  C++S       + +GT +   + NG W P  Y  H     C+C
Sbjct: 11  GGHKQDVRGVCSISNELIGSASRDGTYSVWEQINGEWTPHFYENHEGFVNCVC 63


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 271 NKSDDQSGIIRYVKRMVIHRLSVTSACEN 357
           NK+ D +G    V++ + HRL++ +A  N
Sbjct: 761 NKTADLTGNESLVEKWIFHRLNIAAAAMN 789


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 241 TNGHYVLAGTNKSDDQSG--IIRYVKRMVIHR 330
           T  H +  G+N   + +G  ++ YVK M+ HR
Sbjct: 180 TGKHMLTGGSNIRPEATGYGVVYYVKHMIEHR 211


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 61  NDIPDLKQKSALVT 102
           NDIPDL  K ALVT
Sbjct: 35  NDIPDLTGKVALVT 48


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 55   GANDIPDLKQKSALVTTEITKTQSDVKAV--HERFPHAVLFG 174
            G   +PDLK  S  + TE+ +T    +AV     F H++  G
Sbjct: 887  GLELLPDLKDLSTRLRTELLETAEIRRAVAAETAFDHSITNG 928


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,055
Number of Sequences: 5004
Number of extensions: 31943
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)