Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314H02f
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754... 30 0.53
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 29 0.92
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 29 1.6
03_05_0896 - 28592658-28593331,28594069-28595455 28 2.8
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 27 4.9
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214... 27 6.5
10_03_0025 - 7165873-7165907,7166186-7166329,7166779-7166842,716... 26 8.6
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 26 8.6
05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278 26 8.6
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 26 8.6
>04_01_0580 -
7539208-7539328,7539409-7539579,7539658-7540024,
7540093-7540516
Length = 360
Score = 30.3 bits (65), Expect = 0.53
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 115 KTQSDVKAVHERFPHAVLFGGTCGGSIISPKWI-LTAGH 228
+T++D KA+HE P GG S+++PK + L GH
Sbjct: 125 RTEADSKAIHEPPPMKKRRGGKVNASLLAPKKLDLDKGH 163
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 29.5 bits (63), Expect = 0.92
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 97 VTTEITKTQSDVKAVHERFPHAVL--FGGTCGGSIISPKWILTAGHCTLFTNGHYVLAG 267
+TT SD+ + E VL +GG+ G ++S WI + H T G+Y +G
Sbjct: 346 LTTVEASMNSDILLIRELHWLEVLRLYGGSGQGKLVSFSWIGSLKHLTYLELGNYNFSG 404
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 85 KSALVTTEITKTQSDVKAVHERFPHAVLFGGTCGGSIISP 204
KSA+VTT TK + D + E P V GG I+P
Sbjct: 629 KSAIVTTASTKDEYDTPILAEALPRKVADPFDYGGGNINP 668
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 58 ANDIPDLKQKSALVTTEITKTQSDVKAVHERFPHAVLFG-GTCGGSI 195
+ +IPDLKQ + + A P + G G CGG +
Sbjct: 182 SGEIPDLKQPLQQFNVSFNQLNGSIPATLRTMPRSAFLGTGLCGGPL 228
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 233 VQCPAVRIHFGLIMEPPQVPPKRTACGN 150
V CPA+ + L+ PP + K ++ GN
Sbjct: 918 VICPALNVLVNLVCPPPSISNKSSSTGN 945
>06_01_0293 -
2139421-2139600,2139716-2140471,2140830-2140935,
2140999-2141249,2141342-2141443,2141557-2141876,
2142350-2142546,2143668-2143786,2143876-2143997,
2144877-2145081
Length = 785
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 243 REQCAVSRSEDPFRANNGTSTGTTEKNG 160
RE+ V+R ED R N S T + NG
Sbjct: 389 REEQEVARREDQLRNENAESEATKQSNG 416
>10_03_0025 -
7165873-7165907,7166186-7166329,7166779-7166842,
7166876-7166887
Length = 84
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 200 LIMEPPQVPPKRTACGNLSCTAFTSDCVFVISVVTSA-DFCFKS 72
L + P+ R+A C++ + + VV SA DFCFK+
Sbjct: 10 LFSKAPKNSDSRSAKPGSQCSSCRCEAALPVMVVLSASDFCFKN 53
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 236 CSRTVITYWPVLTNQTTK 289
CSR+ I YW V TN TK
Sbjct: 210 CSRSSIFYWQVGTNSWTK 227
>05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278
Length = 583
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 143 TKGFHMPFFSVVPVEVPLLARNGSSL 220
T FHM +VVP ++ LLA+ SL
Sbjct: 189 TLNFHMTELTVVPADLELLAKKCKSL 214
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +3
Query: 171 RWYLWRFHY*PEMDPHCGTLHTVHERSLRIGRY*QIRRPKRHYSLRETNGHPPS 332
RWY+W + P+M S R+ + RH + R+ H PS
Sbjct: 38 RWYIWNYESDPDMALTSLMTQKEQRHSERVNGGHGLADGNRHPTKRQAAPHEPS 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,195,483
Number of Sequences: 37544
Number of extensions: 234765
Number of successful extensions: 561
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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