Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H02f
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    33   0.068
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    30   0.63 
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    30   0.63 
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    29   0.83 
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    29   0.83 
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   0.83 
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    29   0.83 
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    29   0.83 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   1.1  
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    28   1.9  
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z80215-3|CAB02270.1|  496|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z79753-4|CAB02084.2|  396|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AL031621-3|CAA20935.2|  740|Caenorhabditis elegans Hypothetical ...    26   7.8  
AC006625-13|ABI18147.1|  273|Caenorhabditis elegans Abnormal che...    26   7.8  
AC006625-12|AAK68272.2|  214|Caenorhabditis elegans Abnormal che...    26   7.8  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 33.1 bits (72), Expect = 0.068
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 181 CGGSIISPKWILTAGHC 231
           CGGS+I P ++LTA HC
Sbjct: 84  CGGSLIDPNFVLTAAHC 100


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 136 AVHERFPHAVLFGGTCGGSIISPKWILTAGHCTLFTNGHYVLAGTNKSD 282
           +V  RFP        CGG +I+P  ++T+ HC    +   V A     D
Sbjct: 33  SVITRFPDGTT--NVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGD 79


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 172 GGTCGGSIISPKWILTAGHCTL 237
           G  CG ++I   W++TA HC L
Sbjct: 63  GILCGATVIDDFWLVTAAHCAL 84


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 61   NDIPDLKQKSALVTTEITKTQSDVKAVHER 150
            NDI +LK+K A    EI K +SD+ A+H++
Sbjct: 1123 NDITELKRKHA---AEIDKLKSDISALHDK 1149


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 61   NDIPDLKQKSALVTTEITKTQSDVKAVHER 150
            NDI +LK+K A    EI K +SD+ A+H++
Sbjct: 1196 NDITELKRKHA---AEIDKLKSDISALHDK 1222


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 61   NDIPDLKQKSALVTTEITKTQSDVKAVHER 150
            NDI +LK+K A    EI K +SD+ A+H++
Sbjct: 1196 NDITELKRKHA---AEIDKLKSDISALHDK 1222


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 49  QPGANDIPDLKQKSALVTTEITKTQS 126
           +PG+ DI DLKQK A++T E    +S
Sbjct: 55  KPGSTDINDLKQKIAVLTKEFQGKES 80


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 178 TCGGSIISPKWILTAGHC 231
           TC G+I+SP+ IL A HC
Sbjct: 192 TCTGTIVSPRHILIATHC 209


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 181 CGGSIISPKWILTAGHC 231
           CGG++I+ K +LTA HC
Sbjct: 62  CGGTLITLKHVLTAAHC 78


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 145 ERFPHAVLFG----GTCGGSIISPKWILTAGHCTLFTNGH--YVLAGTNKSDDQSGIIRY 306
           + FP AV F        GGSIISP  I+TA H  + T G    +    N     S I R 
Sbjct: 26  KNFPWAVSFTVDGVNRLGGSIISPYHIITAAHGFITTIGSRGNLCENKNWKKPNSSIYRS 85

Query: 307 VK 312
           +K
Sbjct: 86  IK 87


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 181 CGGSIISPKWILTAGHC 231
           C G++ SP+ ILTA HC
Sbjct: 75  CSGTLTSPRHILTATHC 91


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 178 TCGGSIISPKWILTAGHCTLFTNGHYVLAGTNKSDDQS 291
           TC G+++SP  +LT+  C   T  + +     K  D S
Sbjct: 46  TCTGTLLSPSVVLTSSKCFPDTRKNLIAQAIIKKKDSS 83


>Z80215-3|CAB02270.1|  496|Caenorhabditis elegans Hypothetical
           protein C36B1.5 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 73  DLKQKSALVTTE-ITKTQSDVKAVHERFPHAVLFGGTCGGSIISPKWILTAGHCTLFTNG 249
           DL  K  L+  E  +K+ +DV A H     A+  G  C G +    W +  G C +F +G
Sbjct: 324 DLTTKKELLYQEGHSKSVADV-AFHPDGSVALTGGHDCYGRV----WDMRTGRCIMFLDG 378

Query: 250 H 252
           H
Sbjct: 379 H 379


>Z79753-4|CAB02084.2|  396|Caenorhabditis elegans Hypothetical
           protein F20G2.4 protein.
          Length = 396

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 237 VHERSLRIGRY*QIRRPKRHYSLRETN 317
           VHE S  +GRY +  RP R  SL+ T+
Sbjct: 136 VHEFSHSLGRYHEHTRPDRDNSLKVTS 162


>AL031621-3|CAA20935.2|  740|Caenorhabditis elegans Hypothetical
           protein F28H6.6 protein.
          Length = 740

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 209 GSSLRDTAHCSRTVITYWPVLTNQTTKAA 295
           G+  R   HCS   +TY P  T + + AA
Sbjct: 23  GNFRRSARHCSAPTLTYCPSSTRKKSSAA 51


>AC006625-13|ABI18147.1|  273|Caenorhabditis elegans Abnormal
           chemotaxis protein 1,isoform b protein.
          Length = 273

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 LRETNGHPPSLCDICLREF 359
           LR   GH P +C IC+ +F
Sbjct: 241 LRTHTGHKPYVCSICMMKF 259


>AC006625-12|AAK68272.2|  214|Caenorhabditis elegans Abnormal
           chemotaxis protein 1,isoform a protein.
          Length = 214

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 LRETNGHPPSLCDICLREF 359
           LR   GH P +C IC+ +F
Sbjct: 182 LRTHTGHKPYVCSICMMKF 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,237,010
Number of Sequences: 27780
Number of extensions: 194196
Number of successful extensions: 532
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)