Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H02f
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    34   5e-04
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   0.90 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   4.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   4.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   8.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 34.3 bits (75), Expect = 5e-04
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = +1

Query: 172 GGTCGGSIISPKWILTAGHCTLFTNGH--YVLAG----TNKSDDQSGIIRYVKRMVIH 327
           G  CG +IIS +++LTA HC +  N     ++ G    ++K++  + ++  + +++IH
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIH 242


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 163 VLFGGTCGGSIISPKWILTA-GHCTLFTNGHYVL 261
           VL G TC GS I   W+  A     +F+ G ++L
Sbjct: 575 VLAGATCLGSSIKAMWLRRALASLMVFSLGLFLL 608


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 203 RNGSSLRDTAHCS 241
           +NGS + DTA CS
Sbjct: 200 KNGSVILDTARCS 212


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 49   QPGANDIPDLKQKSALVTTEIT 114
            + GAN  PDL QK    T E+T
Sbjct: 1744 EKGAN--PDLSQKPVSTTEELT 1763


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 20  RWRQVRARYLNPAPMTYRI*NKNLRW 97
           +W QV A +LN +P   ++ N  + W
Sbjct: 653 KWLQVLALWLNHSPNYDQVTNWYMGW 678


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 78  KTKICAGNN*NYKD 119
           +TKI + NN NYK+
Sbjct: 300 ETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 78  KTKICAGNN*NYKD 119
           +TKI + NN NYK+
Sbjct: 311 ETKIISSNNYNYKN 324


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 279 RRPKRHYSLRETNGHP 326
           ++P+RHY  R T   P
Sbjct: 241 QQPERHYERRATPPQP 256


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 201  PEMDPHCGTLHTVHERSLRI 260
            PE  PH  T  T+  +++RI
Sbjct: 1081 PEQPPHDTTCTTLTSQTIRI 1100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,841
Number of Sequences: 438
Number of extensions: 2739
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)