Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314H01f
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   139   1e-34
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   1.6  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   2.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.7  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    24   8.7  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  139 bits (337), Expect = 1e-34
 Identities = 69/130 (53%), Positives = 97/130 (74%), Gaps = 2/130 (1%)
 Frame = +3

Query: 33  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 206
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 207 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 386
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 387 YDAILEDLVF 416
           ++AILED+VF
Sbjct: 124 HNAILEDIVF 133


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 325 LGLGRILRSPTKTTCLPLNFFSSSRTS 245
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 298  ETVRSCLSPATKPVLLTNKRGHAQ 369
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 195 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 287
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 315 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFL 419
           P  S + R  N+++  RSR   S + + LED+++L
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYL 83


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 18  RGMSTKIIKASGAEADSFETSISQALVELETN 113
           +     I  +SG+E  +F+T+ISQ   E++T+
Sbjct: 26  KSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 353 KEATLKDIDLCVRCYPRGL 409
           ++AT++++D C  C  RGL
Sbjct: 110 RKATIRNVDYCSACGGRGL 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,801
Number of Sequences: 5004
Number of extensions: 31482
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)