Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G10f
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.22 
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   0.67 
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   4.7  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   4.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.2  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    24   8.2  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    24   8.2  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 198 PRTVRLSAECVLSAHLWEIGHSAVHTCVVACTLWLCDFL--*NKH 326
           P T+    E +++  LWEI H    T V  C +  C FL   NKH
Sbjct: 706 PFTLNYYGELMMT-WLWEIRHRGAFTSVYPCFIEYCSFLFECNKH 749


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 295  RVQATTHVCTALCPISHKCAERTHSAER 212
            ++ AT ++C A+C I   C++R    ++
Sbjct: 969  QIYATENICVAICKICRFCSQRVQDLDK 996


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 134 RFVICIPDYSIDMKIKHVYVAPPDCAPFGRMRSF 235
           +F++   +Y+I++ +    + PP+ A F   R F
Sbjct: 233 QFLVYFSEYTINIGVAPTLLFPPEKAGFSSFRDF 266


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 165 LI*KLNMCTSLPRTVRLSAECVLSA-HLWEIGHSAVHTCVVAC 290
           L+ K+    + PR  R++ +C+L+A HL  + H   +   ++C
Sbjct: 543 LLHKMKNAKNSPRVDRINEDCILAARHLISLVHLLQNHSQLSC 585


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 282 RHTYVLRYV-RSPINVPKERIRPKGAQSG 199
           RH  V R V  S +N+P E IR KG+ +G
Sbjct: 587 RHDQVPRQVFASMLNLPPEVIRRKGSWTG 615


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 313 RKSHNHRVQATTHVCTALCPISHKCAER 230
           +K    R     HVC + C   H C ER
Sbjct: 728 KKECGKRRMYCEHVCQSPCHAGHPCDER 755


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 170 YQSNNQEYKSRISYKSIIRVSLVDARGR 87
           YQ++NQ +   ISY+    +S   + G+
Sbjct: 135 YQNHNQSFPFGISYEGFYYISFSQSTGK 162


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 342 ENMYRNVYFIGNHITTEYRLRHTYVLRY 259
           +N+Y    FI NH+ T + L  TY ++Y
Sbjct: 338 QNIYFGGSFIRNHVQTMHTL--TYAIQY 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,183
Number of Sequences: 5004
Number of extensions: 24625
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)