Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G10f
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385...    31   0.36 
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           29   1.5  
08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350     28   2.5  
11_06_0464 + 23894893-23895077,23895148-23895706                       26   7.7  

>02_01_0531 -
           3856343-3856373,3856426-3856506,3857972-3858097,
           3858196-3858326,3858832-3858855,3859429-3859482,
           3859967-3860136,3860322-3860380,3861274-3861390,
           3861481-3861611,3861720-3861770,3862305-3862481
          Length = 383

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 200 GERRTHV*FSYQSNNQEYKSRISYKSIIRVSL 105
           GERR +V FS+ S  + Y SR+  K++  +++
Sbjct: 211 GERRGNVRFSHDSKRRPYLSRVEVKAVAEITI 242


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 189 TSLPRTVRLSAECVLSAHLWEIGHSAVHTCVVACTL-WLCD 308
           T+  R  RL A   LSAH+W++  +A H     C L WL D
Sbjct: 250 TASRRATRLEA---LSAHVWKLLAAATHGSDARCRLAWLVD 287


>08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350
          Length = 576

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 285 LRHTYVLRYVRSPINVPKERIRPKGAQS 202
           L+H  VLR   +P+ VP   I  KGAQ+
Sbjct: 504 LKHLRVLRAEENPLQVPPRDIALKGAQA 531


>11_06_0464 + 23894893-23895077,23895148-23895706
          Length = 247

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 334 VQKCLFYRKSHNHRVQATTHVCTALCPISHKCAERTHSAERRTVRGSDVHMF 179
           +  C F+   H  R++       A  P S + +    S  RRT R S VH F
Sbjct: 47  IDSCRFHVGDHAWRIRTPPPPPAATAPPSRRSSCSACSTRRRTYR-SSVHSF 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,690,034
Number of Sequences: 37544
Number of extensions: 163960
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)