Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G09f
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    29   0.49 
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   1.5  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   2.6  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   2.6  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    26   3.5  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    25   6.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.0  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 338 SANEVYILYFLEFSGNHVLYREIDL 264
           S+NE Y++ ++E  GNH LY ++DL
Sbjct: 659 SSNESYLMNYIEQQGNHPLY-DMDL 682


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 143 DACVQGLKVYCDETQVAEKLSRRSGFTC 226
           D C+  +  YCD  + +   SRR  F C
Sbjct: 727 DTCLNAVMEYCDTIKQSASASRRRVFVC 754


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 402 TKIDNMASYSTYTGKQNF 455
           TK+DN++   ++ GKQNF
Sbjct: 418 TKLDNLSCLHSFDGKQNF 435


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 372 DKPLVQIMVVTKIDNMASYSTYTGKQNFSKELVP 473
           D PL + + V  + + AS+S+Y+   N  K L P
Sbjct: 391 DSPLRRSLSVDAMQSNASFSSYSSTSNTDKSLRP 424


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 343 IKSFESFLKGINLLFKLWL*RKSITWPRTPHTRENKISPKNW 468
           IKSFE+ +   N L +LW    S    +T HT +N I   +W
Sbjct: 33  IKSFETSINNSNRLIQLW----SSVLSQTEHT-QNLILNSDW 69


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 392 NLNKRFIPFKKLSKLLIHSANEVYILYFLEFSGNHVLYREI 270
           NL   FI   K+  L  H   ++Y   ++EF   H LY  +
Sbjct: 88  NLRLIFITNPKIDSLT-HVLQQIYTTLYVEFVVKHPLYTHV 127


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 50  RLIHLIY-LV*TIQYYYREERETHCRADYGDVDACVQGL-KVYCDETQVAEKLSRRSGF 220
           +L HLI+ ++  +     +ER T C     D++AC+  + K       V EK  R S F
Sbjct: 260 KLPHLIFKIIEKMTRKNPDERYTSCSGIVNDLEACLDDIDKGLILNDHVLEKTGRTSLF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,697
Number of Sequences: 5004
Number of extensions: 34924
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)