Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G09f
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0594 + 25981587-25981826,25981912-25982160,25982257-259838...    29   2.6  
11_04_0403 + 17298498-17298713,17298799-17299696,17299874-173005...    28   3.5  
03_05_0567 - 25672780-25672965,25673043-25673135,25673237-256732...    28   4.6  

>03_05_0594 +
           25981587-25981826,25981912-25982160,25982257-25983818,
           25984139-25984390,25984471-25984581,25984669-25984729,
           25984829-25984921,25984999-25985184
          Length = 917

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 386 NKRFIP--FKKLSKLLIHSANEVYILYFLEFSGNHVLYREIDLIV 258
           N+ FIP  + K+   ++H   E Y + FL   G  VL   +DL++
Sbjct: 446 NEEFIPDAYAKVQPQVVHEGFESYDIDFLTADGVSVLGDAVDLVI 490


>11_04_0403 +
           17298498-17298713,17298799-17299696,17299874-17300592,
           17301714-17301806,17301884-17302051
          Length = 697

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 386 NKRFIP--FKKLSKLLIHSANEVYILYFLEFSGNHVLYREIDLIV 258
           N+ FIP  + K+   ++H   E Y + FL   G  VL   +DL++
Sbjct: 411 NEEFIPDAYTKVQPQVVHEGFESYDIDFLTEDGVSVLGDAVDLVI 455


>03_05_0567 -
           25672780-25672965,25673043-25673135,25673237-25673297,
           25673385-25673495,25673640-25673825,25673909-25675287,
           25675393-25675776,25675813-25676061,25676147-25676386
          Length = 962

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 386 NKRFIP--FKKLSKLLIHSANEVYILYFLEFSGNHVLYREIDLIV 258
           N++FIP  + K+   ++H   E Y + +L   G  VL   +DL++
Sbjct: 431 NEQFIPDAYAKVQPQVVHEGFESYDIDYLTADGISVLGDAVDLVI 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,105,325
Number of Sequences: 37544
Number of extensions: 187767
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)