Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314G08f
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0921 - 29431812-29432786 31 0.45
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 29 1.8
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 28 3.1
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 28 4.2
09_04_0655 - 19254911-19254983,19255078-19255441,19255816-192559... 27 5.5
07_01_0305 - 2181727-2184793,2185635-2185945 27 5.5
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 27 7.3
06_03_0384 + 20174441-20175788,20176215-20176858 27 7.3
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630... 27 7.3
03_02_0361 - 7800879-7801484,7801614-7802513 27 7.3
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 27 7.3
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666... 27 7.3
01_01_0990 + 7847066-7847478,7847713-7848679 27 7.3
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 27 7.3
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 27 9.6
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 27 9.6
02_05_0270 + 27335318-27335543,27336878-27337277,27337336-27337357 27 9.6
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 27 9.6
01_05_0421 + 21990034-21990392,21991691-21992681 27 9.6
>04_04_0921 - 29431812-29432786
Length = 324
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -3
Query: 398 GVGGVCCSYWRGI*GVGRRKW-SCVGCRKWSCVGSIWASCS 279
G G + W G+ GR W C G R WS G W S S
Sbjct: 138 GGRGARWAAWAGLCSSGRCAWLRCGGSRWWSAAGGRWLSSS 178
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIACCNYGRSC 249
GRR+W C C K V S + + C G SC
Sbjct: 127 GRRQWVCARCAKGYAVQSDYKAHLKTCGTRGHSC 160
>07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = -2
Query: 381 LQLLERHMRCRPQKMELCRLQKMELCRQHMGQLQHSVLQLRKELRSAQQQQVRELLVRSH 202
L +L++ M + Q+ + + Q+M+ +Q Q+Q Q + L+ QQQQ + LL + H
Sbjct: 858 LSMLDKMMLLKQQQQQQMQ-QQMQQQQQMQQQMQQQQKQRLQLLQLEQQQQQQLLLQQQH 916
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIACCNYGRSC 249
G R+W+C C K V S + + C G SC
Sbjct: 140 GHRQWACARCSKAYAVHSDYKAHLKTCGTRGHSC 173
>09_04_0655 -
19254911-19254983,19255078-19255441,19255816-19255901,
19256737-19257410
Length = 398
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -3
Query: 101 SNIGCRICRSNCVASGVVRCCNRGSGYRSSG 9
S + + + C A+ RCC G G R G
Sbjct: 65 SKLAVALALAACAAAASTRCCGSGGGKRGGG 95
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 336 ELCRLQKMELCRQHMGQLQHSVLQLRKELR 247
EL RL K+ LC H+G+ +V+ K LR
Sbjct: 934 ELSRLAKLTLCDTHLGEQDMAVVGNLKALR 963
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -2
Query: 366 RHMRCRPQKMELCRLQKMELCRQ---HMGQLQHSVLQLRKELRSAQQQQVRELL 214
RH + +PQK+E + EL +Q + Q Q L ++++ QQQ ++LL
Sbjct: 1020 RHEQNKPQKLESQMDHQSELVQQQQVYFQQQQQMYLMQQQQMYQQQQQLQQQLL 1073
>06_03_0384 + 20174441-20175788,20176215-20176858
Length = 663
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 113 ISGCSNIGCRICRSNCVASGVVRC-CNRG 30
+ G ++ +C CVA GV+RC NRG
Sbjct: 292 VCGVVSVAMLLCLVGCVACGVLRCRKNRG 320
>03_06_0341 -
33261210-33261327,33261411-33262057,33262950-33263061,
33263313-33264097,33264797-33264867,33266323-33266635
Length = 681
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 381 LQLLERHMRCRPQKMELCRLQKMELCRQHMGQ-LQHSVLQLRKELRSA-QQQQVRELLVR 208
LQ L H + Q+ + + Q+++ +Q Q QH Q +++ + QQQQ + L +
Sbjct: 503 LQQLRHHQLLQQQQQQFQQQQQVQQQQQQQQQQFQHQQQQQQQQFQQQHQQQQQSQQLQQ 562
Query: 207 SHNE 196
H +
Sbjct: 563 QHQQ 566
>03_02_0361 - 7800879-7801484,7801614-7802513
Length = 501
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 426 TGAADTVPLRCRWCMLQLLERHMRCRPQKMELCRL--QKMELCRQHMGQLQHSVLQLRKE 253
+ +DT + W M QLL+ + EL R+ K E+ + QL++ +++
Sbjct: 304 SAGSDTSAVTVEWAMAQLLQNPPAMAKAREELARVIGSKQEIEESDISQLKYLEAVVKET 363
Query: 252 LR 247
LR
Sbjct: 364 LR 365
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 275 LCCSWPICCLHSSIFCSLHSS 337
LCC ICC+ +F SLH+S
Sbjct: 1656 LCC---ICCIEGRVFKSLHTS 1673
>02_02_0089 -
6668179-6668316,6668386-6668565,6668648-6668729,
6669317-6669405,6669503-6669580,6670502-6670559,
6670727-6670956,6671174-6671318,6671417-6671458,
6671681-6671853
Length = 404
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 285 LQHSVLQLRKELRSAQQQQVRELLVRSH 202
L H+VLQ + R + ++V+E VRSH
Sbjct: 339 LNHAVLQNKASQRRSNIEEVKEAQVRSH 366
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIAC 270
G +KW C C K V S W + S C
Sbjct: 97 GEKKWKCDKCSKRYAVQSDWKAHSKTC 123
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIAC 270
G +KW C C K V S W + S C
Sbjct: 147 GEKKWKCDKCSKRYAVHSDWKAHSKVC 173
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIAC 270
G +KW C C K V S W + S C
Sbjct: 120 GEKKWRCDKCSKRYAVQSDWKAHSKTC 146
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIAC 270
G +KW C C K V S W + S C
Sbjct: 116 GEKKWKCDKCSKRYAVQSDWKAHSKIC 142
>02_05_0270 + 27335318-27335543,27336878-27337277,27337336-27337357
Length = 215
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIAC 270
G +KW C C K V S W + S C
Sbjct: 168 GEKKWKCDKCSKRYAVQSDWKAHSKIC 194
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIAC 270
G +KW C C K V S W + S C
Sbjct: 160 GEKKWKCDRCGKRYAVHSDWKAHSKVC 186
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 350 GRRKWSCVGCRKWSCVGSIWASCSIAC 270
G +KW C C K V S W + S C
Sbjct: 79 GEKKWKCDKCSKKYAVHSDWKAHSKIC 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,861,477
Number of Sequences: 37544
Number of extensions: 146311
Number of successful extensions: 570
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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