Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314G08f
(460 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 33 0.076
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 33 0.076
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 30 0.70
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 30 0.70
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 30 0.93
Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical pr... 30 0.93
DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin p... 30 0.93
Z83102-11|CAB05470.1| 310|Caenorhabditis elegans Hypothetical p... 29 1.2
Z81492-11|CAB04035.1| 310|Caenorhabditis elegans Hypothetical p... 29 1.2
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical p... 28 3.8
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 3.8
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 3.8
AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effe... 28 3.8
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 27 5.0
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 27 6.6
AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical ... 27 6.6
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 27 8.7
AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf (tbp-asso... 27 8.7
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 33.5 bits (73), Expect = 0.076
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Frame = -3
Query: 401 CGVGGVCCSYWRGI*GVGR---RKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNN 231
CG G CC G G G R C CR+ C C CC R C
Sbjct: 66 CGCGCGCCGCGGGGGGCGCCCCRPRCCCCCRR--CCTCCRTCCCTRCCTCCRPCCCGCGC 123
Query: 230 RCGSYWCG 207
CG CG
Sbjct: 124 GCGCCGCG 131
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 33.5 bits (73), Expect = 0.076
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Frame = -3
Query: 401 CGVGGVCCSYWRGI*GVGR---RKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNN 231
CG G CC G G G R C CR+ C C CC R C
Sbjct: 67 CGCGCGCCGCGGGGGGCGCCCCRPRCCCCCRR--CCTCCRTCCCTRCCTCCRPCCCGCGC 124
Query: 230 RCGSYWCG 207
CG CG
Sbjct: 125 GCGCCGCG 132
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Frame = -3
Query: 383 CCSYWRGI*GVGR---RKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSYW 213
CC G G G R C CR C C CC R C CG
Sbjct: 56 CCGCGGGGGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCG 115
Query: 212 CG 207
CG
Sbjct: 116 CG 117
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Frame = -3
Query: 383 CCSYWRGI*GVGR---RKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSYW 213
CC G G G R C CR C C CC R C CG
Sbjct: 59 CCGCGGGGGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCG 118
Query: 212 CG 207
CG
Sbjct: 119 CG 120
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 29.9 bits (64), Expect = 0.93
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Frame = -3
Query: 383 CCSYWRGI*GVGR---RKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSYW 213
CC G G G R C CR C C CC R C CG
Sbjct: 54 CCGCGGGGGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCGC 113
Query: 212 CG 207
CG
Sbjct: 114 CG 115
>Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical
protein R06C7.4 protein.
Length = 292
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 326 GCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSY--WCGRIT 198
GC C+G++ +C+ C +G C + ++ CG + C IT
Sbjct: 199 GCGSGKCIGALAGTCNCNSCVFGWPC--QEDSACGGFNGACNSIT 241
>DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin
proteoglycan-3 protein.
Length = 292
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 326 GCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCGSY--WCGRIT 198
GC C+G++ +C+ C +G C + ++ CG + C IT
Sbjct: 199 GCGSGKCIGALAGTCNCNSCVFGWPC--QEDSACGGFNGACNSIT 241
>Z83102-11|CAB05470.1| 310|Caenorhabditis elegans Hypothetical
protein E03H4.13 protein.
Length = 310
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 89 CRICRSN-CVASGVVRCCNRGSGYRSSGYR 3
CR CR N CV SG+ R C R YR R
Sbjct: 59 CRSCRYNKCVQSGMRRDCVRKQSYRRQAGR 88
>Z81492-11|CAB04035.1| 310|Caenorhabditis elegans Hypothetical
protein E03H4.13 protein.
Length = 310
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 89 CRICRSN-CVASGVVRCCNRGSGYRSSGYR 3
CR CR N CV SG+ R C R YR R
Sbjct: 59 CRSCRYNKCVQSGMRRDCVRKQSYRRQAGR 88
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 29.1 bits (62), Expect = 1.6
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = -3
Query: 401 CGVGGVCCSYWRGI*G----VGRRKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSN 234
CG G CC G G R C CR+ C C CC R C
Sbjct: 66 CGCGCGCCGCGGGGGGGCGCCCCRPKCCCCCRR--CCTCCRTCCCTRCCTCCRPCCCGCG 123
Query: 233 NRCGSYWCG 207
CG CG
Sbjct: 124 CGCGCCGCG 132
>Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Frame = -3
Query: 269 CNY-GRSCVARSNNRCGSYWCG-RITXXXXXXXXXXXXXXXXXXXVPCYEGSGFISGCSN 96
CN +C R N C SY C I CY + C+
Sbjct: 537 CNATAENCACRENGVC-SYMCKCDINCSQRFPGCNCAAGQCYTKACQCYRANW---ECNP 592
Query: 95 IGCRICRSNCVASGVVRCCNRG 30
+ C +C+ + + S +++C N G
Sbjct: 593 MTCNMCKCDAIDSNIIKCRNFG 614
>Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Frame = -3
Query: 269 CNY-GRSCVARSNNRCGSYWCG-RITXXXXXXXXXXXXXXXXXXXVPCYEGSGFISGCSN 96
CN +C R N C SY C I CY + C+
Sbjct: 537 CNATAENCACRENGVC-SYMCKCDINCSQRFPGCNCAAGQCYTKACQCYRANW---ECNP 592
Query: 95 IGCRICRSNCVASGVVRCCNRG 30
+ C +C+ + + S +++C N G
Sbjct: 593 MTCNMCKCDAIDSNIIKCRNFG 614
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 341 KWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNN 231
++S GC K C+ + A+CS C+ G +CV +N
Sbjct: 61 RFSRRGCSK-CCLLRVQANCSADLCHNGGTCVPSEHN 96
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 341 KWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNN 231
++S GC K C+ + A+CS C+ G +CV +N
Sbjct: 61 RFSRRGCSK-CCLLRVQANCSADLCHNGGTCVPSEHN 96
>AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effect
sterile 2 protein.
Length = 773
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Frame = -3
Query: 269 CNY-GRSCVARSNNRCGSYWCG-RITXXXXXXXXXXXXXXXXXXXVPCYEGSGFISGCSN 96
CN +C R N C SY C I CY + C+
Sbjct: 537 CNATAENCACRENGVC-SYMCKCDINCSQRFPGCNCAAGQCYTKACQCYRANW---ECNP 592
Query: 95 IGCRICRSNCVASGVVRCCNRG 30
+ C +C+ + + S +++C N G
Sbjct: 593 MTCNMCKCDAIDSNIIKCRNFG 614
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = -3
Query: 401 CGVGGVCCSYWRGI*GVGRRKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCG 222
CG G CC R C CR+ C C CC R C CG
Sbjct: 82 CGCGCCCC-----------RPRCCCCCRR--CCTCCRTCCCTRCCTCCRPCCCGCGCGCG 128
Query: 221 SYWCG 207
CG
Sbjct: 129 CGCCG 133
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = -3
Query: 401 CGVGGVCCSYWRGI*GVGRRKWSCVGCRKWSCVGSIWASCSIACCNYGRSCVARSNNRCG 222
CG G CC G G G C R C C CC +C CG
Sbjct: 68 CGCGCGCCGCGGGGGGCG---CCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
Query: 221 SYWCG 207
CG
Sbjct: 125 CGCCG 129
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 27.1 bits (57), Expect = 6.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 275 LCCSWPICCLHSSIFCS 325
LCC CC+H+ +FC+
Sbjct: 282 LCCCICHCCMHACMFCT 298
>AC024748-4|AAF60410.1| 251|Caenorhabditis elegans Hypothetical
protein Y110A2AR.1 protein.
Length = 251
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 282 QHSVLQLRKELRSAQQQQVR 223
+ S +Q R++LRS QQQQ R
Sbjct: 227 RRSTMQTRRQLRSVQQQQFR 246
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 101 SNIGCRI-CRSNCVASGVVRCCNRG 30
SN+ C C S+ +G+ RCC +G
Sbjct: 522 SNVSCATECHSDSQCAGMKRCCRQG 546
>AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 6.1
protein.
Length = 470
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/59 (22%), Positives = 25/59 (42%)
Frame = -2
Query: 405 PLRCRWCMLQLLERHMRCRPQKMELCRLQKMELCRQHMGQLQHSVLQLRKELRSAQQQQ 229
P + W + +L E + RC+ R+ +L Q +L +L+ +R+ Q
Sbjct: 399 PKKAAWLLTELGETNARCKSHIESGSRIGASQLSIQEAQKLNQQILKCENSIRNRYNLQ 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,170,634
Number of Sequences: 27780
Number of extensions: 109504
Number of successful extensions: 507
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -