Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81589-10|CAB04718.2|  182|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U58763-2|AAK68876.1|  673|Caenorhabditis elegans Metaphase-to-an...    27   8.1  

>Z81589-10|CAB04718.2|  182|Caenorhabditis elegans Hypothetical
           protein T08G5.3 protein.
          Length = 182

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 308 YKFELERSKEYRTKCL 355
           YKF+ E  KE+R KCL
Sbjct: 57  YKFDKEEKKEFREKCL 72


>Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical
           protein Y7A9C.8 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = -1

Query: 224 FKIFCFYLVV*MA--LILCLYNF*--YKLIDSVHFCSRLY*SYF---EKHVILQNAFMAM 66
           F     YLV+ +A  +IL LY F   +  I  +    R    YF   EKH+ L   FM+ 
Sbjct: 88  FSEIAVYLVICLAFFIILALYQFTETFHFIIFLLAAQRFLVFYFPSTEKHIALFQKFMSK 147

Query: 65  IVYFIN*ISL 36
            V++++ +S+
Sbjct: 148 KVWYVHLVSV 157


>U58763-2|AAK68876.1|  673|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 3
           protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 302 YFYKFE-LERSKEYRTKCLCYST 367
           +F+K E  +++ EY TKCL + T
Sbjct: 586 HFFKIEDFDKASEYATKCLAFET 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,134
Number of Sequences: 27780
Number of extensions: 200477
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)