Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      30   0.24 
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   2.2  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.0  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.0  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 102 YVICVLHPFETNLLLVICFGFYLYLFTLRFF 10
           ++   +HP+++N++   CF FY  LF+   F
Sbjct: 92  HIAIFIHPYDSNVVPFFCFFFYFSLFSFFSF 122


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 404 IILNRVVSDIAYPYI--SYLPCGVSHFDSVDSLYSLPEFIEIFQ 279
           ++LNR+ + +  P I  S +P    H D V+    L E +E+FQ
Sbjct: 190 LVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ 233


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +3

Query: 138 NEISMRSSVSYILSHAPGE-----SVMSHPDYGQHAQHHACLLVLVKGIGGMLKNFNKLW 302
           N+  +  S+S +L HA  E     + +S  D G   + H C+ +++  +  + K  +K W
Sbjct: 172 NKHRLIQSMSCMLRHAKLEDEFMKAYISEEDVGYADEIHKCIQMVLSDLDSIYKRESKNW 231

Query: 303 ERIQRINTIKVTDSAGQ 353
             + +   +   ++A Q
Sbjct: 232 HIVSQFYNMLELEAARQ 248


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 222 QHAQHHACLLVLVKGIGGMLKNFNKLWERIQRINTIKVTDSAGQVRD 362
           + A     +L  VK +       NKLW RIQ +  IK      Q R+
Sbjct: 118 EDASRKGTVLDSVKFLVINFTEMNKLWVRIQHLGPIKEFSKRTQERN 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,617
Number of Sequences: 5004
Number of extensions: 45603
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)