Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.27 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 VSYILSHAPGESVMSHPDYG-QHAQHHACLLVLVKGIG 272
           +S +L HA    V+S  DY   + +H A LLV+    G
Sbjct: 488 LSELLGHAFHSQVLSMSDYDISNIEHEALLLVITSTFG 525


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
 Frame = +1

Query: 172 YCLTPQENL*CLIQTMG-----STP--NITHA 246
           YCLTP E L  L  T       STP  N++HA
Sbjct: 147 YCLTPTERLEALCWTQDEDVICSTPIGNLSHA 178


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
 Frame = +1

Query: 172 YCLTPQENL*CLIQTMG-----STP--NITHA 246
           YCLTP E L  L  T       STP  N++HA
Sbjct: 200 YCLTPTERLEALCWTQDEDIICSTPIGNLSHA 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,811
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)