Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...   138   4e-34
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...   130   2e-31
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   5.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   9.0  

>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score =  138 bits (335), Expect = 4e-34
 Identities = 63/113 (55%), Positives = 76/113 (67%)
 Frame = +2

Query: 2   VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDLESKINQAV 181
           VAAGVIPSPFEY DIVTTTTHK+LRGPR  +IF+RKG RS    G  ++Y+LE KIN +V
Sbjct: 228 VAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYRKGTRSHDKRGNPILYELEDKINFSV 287

Query: 182 FPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSI 340
           FPG QGGPHNH               EF +YQK V+ NA+ +    I+RGY +
Sbjct: 288 FPGHQGGPHNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKL 340



 Score = 79.0 bits (186), Expect = 4e-16
 Identities = 37/57 (64%), Positives = 43/57 (75%)
 Frame = +3

Query: 351 GTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALT 521
           GTD HL LVDL   G+ GA  ER+LEL +++ NKNTVPGD SAL P G+RLGTPA T
Sbjct: 344 GTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACT 400


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score =  130 bits (313), Expect = 2e-31
 Identities = 61/113 (53%), Positives = 73/113 (64%)
 Frame = +2

Query: 2   VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDLESKINQAV 181
           V+AGVIPSPFEY D+VTTTTHK+LRGPR  +IFFR+G+R     G  + YDLE KIN +V
Sbjct: 222 VSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDKKGNPIYYDLEDKINFSV 281

Query: 182 FPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSI 340
           FPG QGGPHNH                + EYQ QV+KNA+   E    RGY +
Sbjct: 282 FPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKL 334



 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 36/57 (63%), Positives = 45/57 (78%)
 Frame = +3

Query: 351 GTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALT 521
           GTD H+ LVD++  G+ GA AERVLEL ++  NKNTVP D SA +PSGIR+GTPA+T
Sbjct: 338 GTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMT 394


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +2

Query: 17  IPSPFE-YCDIVTTTTHKTLRGPRAGVIFFRK----GVRSVKANGQKVMYDLESKINQAV 181
           IP PF  +   +   TH TL  P   +IF       G R  K  G    Y + SK+ + +
Sbjct: 102 IPMPFYLHAKCLKNNTHITLCSPERKIIFRASGGTCGFRKGKRRGYDAAYTICSKVLEQI 161


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 211 VVRSALQAREHSLVYLRFQIVHDLLSVRLD 122
           V +    +RE SL++LR ++   LLS + D
Sbjct: 338 VAKRTFHSREQSLLFLRHKLQSSLLSPKQD 367


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 366 LALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISAL 482
           LA++ LR     G P +R++ L     +  T  GDI  L
Sbjct: 532 LAIIRLRTKQRNGKPQDRIISLLVPEMDVITAVGDIGTL 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,345
Number of Sequences: 5004
Number of extensions: 32680
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)