Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314G03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 140 6e-34
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 115 3e-26
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 109 1e-24
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 105 3e-23
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 101 4e-22
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 42 4e-04
04_04_0517 + 25841292-25842099,25842256-25842308 28 4.0
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103... 27 9.1
01_03_0295 + 14750162-14750369,14751601-14752019 27 9.1
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 140 bits (339), Expect = 6e-34
Identities = 61/113 (53%), Positives = 78/113 (69%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANGQKVMYDLESKINQAV 181
VAAGV+PSPF+Y D+VTTTTHK+LRGPR +IF+RKGV+ V G++VMYD E KIN AV
Sbjct: 248 VAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKGVNKQGKEVMYDFEDKINAAV 307
Query: 182 FPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSI 340
FPGLQGGPHNH E+ YQ+QV+ N + + L ++GY +
Sbjct: 308 FPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVMSNCAKFAQSLTAKGYEL 360
Score = 61.3 bits (142), Expect = 5e-10
Identities = 31/57 (54%), Positives = 39/57 (68%)
Frame = +3
Query: 351 GTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALT 521
GTD HL LV+L+ G+ G+ E+VLE +A NKNTVPGD+SA+ GTPALT
Sbjct: 364 GTDNHLVLVNLKSKGIDGSRVEKVLENVHIAANKNTVPGDVSAMLHD--HAGTPALT 418
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 115 bits (276), Expect = 3e-26
Identities = 58/114 (50%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVR-SVKANGQKVMYDLESKINQA 178
VAA +PFEYCD+VTTTTHK+LRGPRAG+IF+RKG + K + +YD E KIN A
Sbjct: 223 VAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDYEDKINFA 282
Query: 179 VFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSI 340
VFP LQGGPHNH F Y KQV NA + + L+S+GY +
Sbjct: 283 VFPSLQGGPHNHQIAALAVALQQTMTPGFKAYAKQVKANAVAIGKYLMSKGYKM 336
Score = 70.9 bits (166), Expect = 6e-13
Identities = 32/57 (56%), Positives = 41/57 (71%)
Frame = +3
Query: 351 GTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALT 521
GT+ HL L DLR +GL G E++ +LCS+ NKN V GD SAL P G+R+GTPA+T
Sbjct: 340 GTENHLVLWDLRPLGLTGNKVEKMCDLCSITLNKNAVFGDSSALAPGGVRIGTPAMT 396
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 109 bits (263), Expect = 1e-24
Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVR-SVKANGQKVMYDLESKINQA 178
VAA +PF+Y D+VTTTTHK+LRGPR+G+IF+RKG++ K + +YD E +IN A
Sbjct: 176 VAAQEAANPFQYSDVVTTTTHKSLRGPRSGMIFYRKGLKPPKKGQPEGALYDYEDRINFA 235
Query: 179 VFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISRGYSI 340
VFP LQGGPHNH F Y KQV NA L L+S+GY +
Sbjct: 236 VFPSLQGGPHNHQIAALAVGLKQTMSPGFKSYIKQVKANAVALGNHLMSKGYKL 289
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = +3
Query: 351 GTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALT 521
GT+ HL L DLR +GL G E+V +LCS+ NKN V GD SA++P G+R+GTPA+T
Sbjct: 293 GTENHLVLWDLRPLGLTGNKVEKVCDLCSITLNKNAVFGDSSAMSPGGVRIGTPAMT 349
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 105 bits (251), Expect = 3e-23
Identities = 56/115 (48%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANG------QKVMYDLES 163
VAA +PF+YCDIVT+TTHK+LRGPR G+IFFRKG K G + YD E
Sbjct: 325 VAAKECRNPFDYCDIVTSTTHKSLRGPRGGIIFFRKGKNLRKRVGSLTQVVENDQYDFED 384
Query: 164 KINQAVFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISR 328
+IN AVFP +QGGPHN+ EF Y +QV KNAQ L L+ R
Sbjct: 385 RINFAVFPSMQGGPHNNHIAALAIALKQVAMPEFKAYIQQVKKNAQALAMALLRR 439
Score = 50.4 bits (115), Expect = 9e-07
Identities = 26/57 (45%), Positives = 34/57 (59%)
Frame = +3
Query: 351 GTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALT 521
GTD HL L DLR GL G E+V E C ++ NK + GD +++P GTPA+T
Sbjct: 447 GTDNHLMLWDLRTFGLTGKNFEKVCEACHISLNKTPIYGDNGSISPG----GTPAMT 499
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 101 bits (242), Expect = 4e-22
Identities = 53/114 (46%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Frame = +2
Query: 2 VAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFFRKGVRSVKANG-----QKVMYDLESK 166
VAA SPF+YCD+VT+TTHK LRGPR G+IFFR+G + G + YD E +
Sbjct: 355 VAAKECRSPFDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADENDYDFEDR 414
Query: 167 INQAVFPGLQGGPHNHXXXXXXXXXXXXXXXEFVEYQKQVIKNAQRLCEGLISR 328
IN AVFP +QGGPHN+ E+ Y QV KNAQ L L+ R
Sbjct: 415 INFAVFPSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRR 468
Score = 64.9 bits (151), Expect = 4e-11
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3
Query: 351 GTDVHLALVDLRGVGLRGAPAERVLELCSVACNKNTVPGDISALNPSGIRLGTPALT 521
GTD HL L DLR +GL G E+V E C ++ NK + GD +++P G+R+GTPA+T
Sbjct: 476 GTDNHLVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIGTPAMT 532
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 23 SPFEYCDIVTTTTHKTLRGPRAGVIFFRKG 112
S F +CD+VT+T +K L GPR G IFFR+G
Sbjct: 1677 SLFNHCDVVTST-NKNLTGPRGGTIFFRRG 1705
>04_04_0517 + 25841292-25842099,25842256-25842308
Length = 286
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 340 SDGRAPTCTSRSWICAAS 393
S GR PTC +R W C S
Sbjct: 191 STGRRPTCGARGWSCTCS 208
>07_03_0908 +
22507565-22507810,22507925-22508872,22509314-22510337,
22510425-22510477
Length = 756
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = +1
Query: 313 GFNIARVLYSDGRAPTCTSRSWICAASGCGXXXXXXXXXXXXXXXTRTPCPATL 474
GFN+ R + T R ++C+ G TRT CPA +
Sbjct: 255 GFNVRRASMTMNAENVITRRMFVCSKEGFREKKRGAKRVKKPRPETRTGCPACM 308
>01_03_0295 + 14750162-14750369,14751601-14752019
Length = 208
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 80 DHAASYEWWWSQYRSIRTG 24
DH WWW Q+ S R G
Sbjct: 142 DHLRQKWWWWGQHWSCRLG 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,279
Number of Sequences: 37544
Number of extensions: 277703
Number of successful extensions: 921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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