Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    28   3.5  

>Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical
           protein F14H3.2 protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -2

Query: 388 YINIYLFIASLFVLITLLT*TSYFSC*-EYPSTNIISIA-QLINCLFCIQNFDIFEYWCI 215
           Y  +YL I   +  I  LT          YP    +++      CLF  Q+ D+ E W +
Sbjct: 221 YDTVYLEITDFYKKIIKLTRYDLIPIPLAYPQAVFLAVRIYFFFCLFTRQHLDLEENWAL 280

Query: 214 PFSTFTVIKTSKFILM 167
               F ++ T +FI +
Sbjct: 281 SHWGFPLLTTLQFIFL 296


>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 399 RWDLRQVNRVFQRNFKYCFHVIYISMLIEDL 491
           ++  + ++ +FQ NF++ F  +YIS  +E L
Sbjct: 4   KFKFKIISEIFQENFRFIFFKLYISETLECL 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,625
Number of Sequences: 27780
Number of extensions: 215933
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)