Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314G01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 28 0.73
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 28 0.97
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 3.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 3.0
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 5.2
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 6.8
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 25 6.8
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 9.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.0
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 25 9.0
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 400 GTEVGKSRLTIRPPSISISNTLS 332
GTEV K R+TI+ S S+S+T++
Sbjct: 89 GTEVKKGRITIKGSSSSVSHTIN 111
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 177 GSAFKAQFTIRVKSPGRLQAKLENPQHGNFNEQLPDPRELPVDLKYQPTPNI 332
G F Q+ R+KSP LQA L E + P +L DL P+I
Sbjct: 503 GPKFLWQWLQRLKSPANLQALLNRIIFIIAKETVTTPLQLTSDLSISSVPSI 554
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 238 FAWSRPGLFTRIVNCALKALPLLGPSCKCAKVREVTSYRYCLPTCQGDG 92
F W+R L R ++ ++L G +K REV + C +G
Sbjct: 90 FKWNRERLLERYIDAPEESLQKAGVGLSGSKQREVVHHEGTCEICYDEG 138
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 366 RIVSLDFPTSVPVPQENLIKGLISALQLDTSAHRVIHDSQNN 491
+++S + S V E +++ L + + +DT+ + HDS N
Sbjct: 1025 KLISACYKESRQVISEKIVRNLCAYVCMDTTETPIFHDSGKN 1066
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 279 PDPRELPVDLKYQPTP-NIDKVFEIEIDGGRIVSLDFPTSVPVP 407
P P EL D++Y P P ++D + + D V++D T P P
Sbjct: 119 PLPNELEEDIEYMPPPVHLDPIQSLGFDD---VAIDCETLDPWP 159
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +3
Query: 243 ENPQHGNFNEQLPDPRELPVDLKYQPTPNIDKVFEIEIDGGRIVSLDFPTSVPVPQENLI 422
E PQ G+ LP+ R L D K+ T ID + + + +L TS E+++
Sbjct: 350 EAPQQGDSFPSLPEIRALFKDCKFYRT--IDSSIKDQPFSRLLRTLQIYTSRKEATEHIL 407
Query: 423 KGLIS 437
G +S
Sbjct: 408 SGAVS 412
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 76 VDWLWLLN-RSEDTAAIIAAKTNSFI 2
V WLWLLN R++ A I A+ + F+
Sbjct: 136 VFWLWLLNPRTQGAAFIYASYISPFL 161
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 353 FNFEYLIDVRRRLVLEINRQFPRVRELL 270
F EYL++ RRL+ + P V LL
Sbjct: 1159 FEEEYLVNSLRRLIARVEEIRPEVHRLL 1186
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Frame = +3
Query: 246 NPQHGNFNEQLPDPRELPVDLKYQPTPNIDKVFEIEIDGGRIVSLDF--PTSVP------ 401
N +GN + LP LK+ TP+ + F I+ LD P SVP
Sbjct: 65 NSCNGNTSSSLPCTDSYQYPLKHSCTPSFLRKFNESIENVSYKCLDHSPPDSVPGDFSIS 124
Query: 402 -VPQENLI 422
VPQ N +
Sbjct: 125 LVPQRNFL 132
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +3
Query: 93 PSPWQVGKQYRYEVTSRTLAHLQEGPSSGSAFKAQFTIRVKSPGRLQAKLENPQHGNFNE 272
P P+ V ++ + +++ E P +GS + + + V +Q L+ HGN
Sbjct: 23 PPPFTV-EEAENSINNKSSTASLESPQNGSWHPSLYGLSVPEKTHIQNSLDLYSHGNSGS 81
Query: 273 Q 275
Q
Sbjct: 82 Q 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,685
Number of Sequences: 5004
Number of extensions: 40238
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -