Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    68   5e-14
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   5.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   5.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   5.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   5.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   5.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 68.1 bits (159), Expect = 5e-14
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
 Frame = +3

Query: 102 WQVGKQYRYEVTSRTLAHLQE--GPSSGSAFKAQFTIRVKSPGRLQAKLENPQHGNFNEQ 275
           WQVG +Y Y V SRTL  L +     +G   KA  T++ K    L AK+ N Q+    + 
Sbjct: 22  WQVGNEYTYLVRSRTLTSLGDLSDVHTGILIKALLTVQAKDSNVLAAKVWNGQYARVQQS 81

Query: 276 LPDPRELPVD---LKYQPTPNIDKVFEIEIDGGRIVSLDFPTSVPVPQENLIKGLISALQ 446
           +PD  E  +    L+ +  P   K F+I +  G I  L     VP  + N++K ++  LQ
Sbjct: 82  MPDGWETEISDQMLELRDLPISGKPFQIRMKHGLIRDLIVDRDVPTWEVNILKSIVGQLQ 141

Query: 447 LDTSAHRVI 473
           +DT     +
Sbjct: 142 VDTQGENAV 150


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 43  PRIGLAARASPQADKHIH 96
           P IG+++R S  +DK+IH
Sbjct: 124 PVIGISSRDSAFSDKNIH 141


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 183 RFRCLDPPANAPK 145
           RFRC+ PP   P+
Sbjct: 147 RFRCIGPPTPFPR 159


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 306 LKYQPTPNIDKVFEIEI 356
           LKY  TPN+ K+ + E+
Sbjct: 263 LKYYVTPNLSKLSDPEV 279


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 306 LKYQPTPNIDKVFEIEI 356
           LKY  TPN+ K+ + E+
Sbjct: 316 LKYYVTPNLSKLSDPEV 332


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 NFNEQLPDPRELPVDLKYQPTP 326
           N+ EQ+P P  +PV + Y   P
Sbjct: 106 NYIEQIPVPVPVPVPVYYGNFP 127


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 NFNEQLPDPRELPVDLKYQPTP 326
           N+ EQ+P P  +PV + Y   P
Sbjct: 106 NYIEQIPVPVPVPVPVYYGNFP 127


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 261 NFNEQLPDPRELPVDLKY 314
           N+ EQ+P P  +PV + Y
Sbjct: 106 NYIEQIPVPVPIPVPVYY 123


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 NFNEQLPDPRELPVDLKYQPTP 326
           N+ EQ+P P  +PV + Y   P
Sbjct: 106 NYIEQIPVPVPVPVPVYYGNFP 127


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 121 YCLPTCQGDGYVCPPVDWLW 62
           YCL +       C P  W+W
Sbjct: 148 YCLFSFLNTIVYCVPAGWIW 167


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 261 NFNEQLPDPRELPVDLKYQPTP 326
           N+ EQ+P P  +PV + Y   P
Sbjct: 339 NYIEQIPVPVPVPVPVYYGNFP 360


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 279 PDPRELPVDLKYQPTP 326
           PDP E+ +  + QPTP
Sbjct: 285 PDPGEVDLPPETQPTP 300


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 374 YDSTSVNFNFEYLIDVRRRLVLEINRQFPRVRELLIE 264
           ++   V   FE L D  + L  ++NR      ELL +
Sbjct: 183 FNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFK 219


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 79  PVDWLWLL 56
           P DWLW++
Sbjct: 384 PADWLWIV 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,042
Number of Sequences: 438
Number of extensions: 3366
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)