Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314G01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04020.1 68417.m00572 plastid-lipid associated protein PAP, p...    29   2.5  
At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein] reduct...    27   5.8  

>At4g04020.1 68417.m00572 plastid-lipid associated protein PAP,
           putative / fibrillin, putative strong similarity to
           plastid-lipid associated proteins PAP1 GI:14248554, PAP2
           GI:14248556 from [Brassica rapa], fibrillin [Brassica
           napus] GI:4139097; contains Pfam profile PF04755:
           PAP_fibrillin
          Length = 318

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 165 GPSSGSAFKAQFTIRVKSPGRLQAKLENPQHGNFNEQLPDPRELP 299
           GP S ++F       ++SP R+Q K E    G    QL D  E+P
Sbjct: 192 GPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIG--TPQLTDSIEIP 234


>At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein]
           reductase, chloroplast / 3-ketoacyl-acyl carrier protein
           reductase identical to 3-oxoacyl-[acyl-carrier protein]
           reductase SP:P33207 from [Arabidopsis thaliana]
          Length = 319

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 168 PSSGSAFKAQFTIRVKSPGRLQAKLENP 251
           P S S  KAQ T   +SPG +  K+E+P
Sbjct: 50  PFSTSVVKAQATATEQSPGEVVQKVESP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,756,903
Number of Sequences: 28952
Number of extensions: 223373
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)