Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314F12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 117 5e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 117 5e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 6e-22
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.56
07_03_1414 - 26403361-26403969 29 2.3
07_03_1422 + 26462871-26463434,26463772-26463897 28 5.2
07_03_1413 - 26396426-26396890 28 5.2
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 5.2
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617... 27 9.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 117 bits (282), Expect = 5e-27
Identities = 51/77 (66%), Positives = 62/77 (80%)
Frame = +1
Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 334 KTTAKGLFKILEKYRPE 384
K A LFK+L KYRPE
Sbjct: 82 KNLATNLFKMLLKYRPE 98
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 117 bits (282), Expect = 5e-27
Identities = 51/77 (66%), Positives = 62/77 (80%)
Frame = +1
Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 334 KTTAKGLFKILEKYRPE 384
K A LFK+L KYRPE
Sbjct: 66 KNLATNLFKMLLKYRPE 82
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 100 bits (240), Expect = 6e-22
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +1
Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 334 KTTAKGLFKILEKYRPE 384
K ++L++ + E
Sbjct: 83 KNLGCQKERLLKRAQAE 99
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.56
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 252 PHPAPEGCTSASSESAPSDQP 314
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1414 - 26403361-26403969
Length = 202
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 264 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 124
AL A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 264 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 124
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 264 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 124
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 199 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 107
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>04_04_1357 +
32860677-32860781,32861484-32861588,32861678-32861728,
32861829-32861949,32862495-32862616,32863032-32863133,
32863226-32863300,32863391-32863470,32863601-32863751,
32863850-32864080,32864221-32864517,32864638-32864751,
32864857-32865030
Length = 575
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 234 YKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFDH 121
YK+ V+ LN + N + ++E+ +HD+L L ++DH
Sbjct: 477 YKTRVVSESLNPVWNQTFDF-VVEDGLHDMLMLEVYDH 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,981,647
Number of Sequences: 37544
Number of extensions: 250032
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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