Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314F12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 121 4e-28
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 121 4e-28
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 5e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 7e-22
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 38 0.003
Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical pr... 32 0.29
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (gr... 27 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 121 bits (291), Expect = 4e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +1
Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 334 KTTAKGLFKILEKYRPET 387
+A+ FK+L+KYRPE+
Sbjct: 90 SQSARQAFKLLDKYRPES 107
Score = 32.3 bits (70), Expect = 0.22
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 459 KXPNTIRSGTNTVTKLVEKK 518
K PNT+R G NT+T+LVE +
Sbjct: 132 KRPNTVRHGVNTITRLVETR 151
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 121 bits (291), Expect = 4e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +1
Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 334 KTTAKGLFKILEKYRPET 387
+A+ FK+L+KYRPE+
Sbjct: 90 SQSARQAFKLLDKYRPES 107
Score = 32.3 bits (70), Expect = 0.22
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 459 KXPNTIRSGTNTVTKLVEKK 518
K PNT+R G NT+T+LVE +
Sbjct: 112 KRPNTVRHGVNTITRLVETR 131
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 5e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +1
Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 334 KTTAKGLFKILEKYRPET 387
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 7e-22
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = -3
Query: 486 CRIGWCWASLGRLIF-LGNL-SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCL 322
C +G C A L I + N SF SFP QP+ C +++P F+ N+EKA + C ++Q
Sbjct: 142 CFLGLCMAILQLSIAAVANYYSFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIG 201
Query: 321 GKLV 310
G+++
Sbjct: 202 GRII 205
>Z75537-5|CAA99837.3| 335|Caenorhabditis elegans Hypothetical
protein F18E2.4 protein.
Length = 335
Score = 31.9 bits (69), Expect = 0.29
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Frame = -3
Query: 492 CLCRIGWCWASLGRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKL 313
CL GWC A L+ + N F +P+ F + VF S +L+ G L
Sbjct: 112 CLGLSGWCMACGSTLLLVINRVFDVLCRPVSEFLFDGKRVF-------FSIALIYTYGTL 164
Query: 312 VDRRGHFQTTLKYSLLALDAD--ILGPSYKSGQVTSWLNALTNSKVLW 175
V +++A AD + P YK+ ++T W S W
Sbjct: 165 VSMFSP-SIIFNSAIMAWIADPLTIDPEYKTDEITDWYRNHVQSTNNW 211
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 302 LRSTNLPRHWTRLQLRA 352
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 243 QVYPHPAPE--GCTSASSESAPSDQPIYP 323
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 243 QVYPHPAPE--GCTSASSESAPSDQPIYP 323
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 243 QVYPHPAPE--GCTSASSESAPSDQPIYP 323
Q YP P P+ GCT + + P QP P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189
>U53148-3|AAB37077.1| 282|Caenorhabditis elegans Ground-like (grd
related) protein10 protein.
Length = 282
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = +3
Query: 231 CKMAQVYPHPAPEGCTSAS-------SESAPSDQPIYPDTGQDYS*GP 353
C P P P GC+ + +++ DQPIY T Q Y+ P
Sbjct: 35 CAPRPACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTPQSYAQPP 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,185
Number of Sequences: 27780
Number of extensions: 191304
Number of successful extensions: 638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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