Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   118   2e-27
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           118   3e-27
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   4.4  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    27   5.8  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   5.8  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  118 bits (284), Expect = 2e-27
 Identities = 51/77 (66%), Positives = 63/77 (81%)
 Frame = +1

Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 334 KTTAKGLFKILEKYRPE 384
           K  A  LFKIL KYRPE
Sbjct: 80  KNLATSLFKILLKYRPE 96


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  118 bits (283), Expect = 3e-27
 Identities = 50/77 (64%), Positives = 63/77 (81%)
 Frame = +1

Query: 154 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 333
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 334 KTTAKGLFKILEKYRPE 384
           K  A  LFK+L KYRPE
Sbjct: 81  KNLATSLFKVLLKYRPE 97


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 411  QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 322
            QP  P CF L P  L  LE + +CS++  +
Sbjct: 992  QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 451 PPQRXPTPSDPAQTQSPSWS 510
           PP   PTPS P   +SPS+S
Sbjct: 142 PPVYKPTPSPPVYKKSPSYS 161


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 441 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 346
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,027,819
Number of Sequences: 28952
Number of extensions: 184894
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)