Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314F11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 180 1e-46
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 29 0.42
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 29 0.56
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 3.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 3.0
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 5.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 5.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 6.8
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 6.8
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 9.0
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 180 bits (438), Expect = 1e-46
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = +3
Query: 117 DCALDLMRRLPPQQIEKNLTDLIDLVPSMCDDLLSSVDQPLKIAXDRSNGKDYLLCDYNR 296
D ALDL+RRL P+ I KNL ++ + P + D LLSSVDQPLK+ +G YLLCD+NR
Sbjct: 5 DAALDLLRRLNPKDISKNLDTILSVAPDLADVLLSSVDQPLKVNTCSESGNQYLLCDFNR 64
Query: 297 DGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVYLWDMDH 476
DGDSYRSPWSN YDPPL+DG + ++R+RKLE+ N A Y ++Y+EGGVSSVYLWD D
Sbjct: 65 DGDSYRSPWSNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLDLYYEGGVSSVYLWDQDD 124
Query: 477 GFAGVILIKKA 509
+AG +LIKKA
Sbjct: 125 SYAGAVLIKKA 135
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.42
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 177 DLIDLVPSMCDDLLSSVDQPLKIAXDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDD 353
D+ + VP DD + P + R + D Y+R GDSYRS S +D +D
Sbjct: 225 DIYNDVPIYADDEPEDIWGPSSKSTKRRDSADRS-SSYSRRGDSYRSNRSRAHDDDDED 282
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 0.56
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 135 MRRLPPQQIEKNLTDLIDLVPSMCDDLLSS-VDQPLKIAXDRSNGKDYLLCDYNRDGDSY 311
M P + + + D+ D + S DD LS + + K D +G+ + ++ D
Sbjct: 14 MNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFEEDSPY- 72
Query: 312 RSPWSNTYDPPLDDGSMPSERLR 380
P PP DD SMP +R
Sbjct: 73 --PEVRAAVPPTDDPSMPCNTIR 93
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 237 LKIAXDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQ 416
++I + SN L Y D P YD L+DG +E+ +++ N F Q
Sbjct: 1428 VRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQV-WHVNPKFTQ 1486
Query: 417 YR 422
YR
Sbjct: 1487 YR 1488
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 270 DYLLCDYNRDGDSYRSPWS---NTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEG 440
DYLL NR S S WS N D L + + + +L K D N + + Y G
Sbjct: 240 DYLLFHLNRIDPSLYSKWSLPTNDVDEFLQNTAYKARKLTKGGFDENFVSNYVIQQYRIG 299
Query: 441 GVSSVYLWDMD 473
+ L +D
Sbjct: 300 RLGRFQLDTID 310
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 491 YSCKSMIHIPKVD*ANATFKVHLSILIKGEVGIYF*FSQAFRGHGAI 351
Y +SM+ +PKVD + + S I G YF F Q F H +
Sbjct: 77 YEFQSMVSLPKVDRVSKFLSDNES--ISQTSGDYFIFLQRFYAHAIL 121
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 306 SYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVY 458
S SP +Y PP S+ S R+ + ++ + YR++ E S+ Y
Sbjct: 64 SNNSPHRFSYSPPQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAY 114
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -3
Query: 327 STKETYRSHRRDCNRIINSLSRCYDXEQSLEADLLMIIGRHTYSERGLSNLLNSFRSAEG 148
S E+ +S + I NS S + +L+A + IIG S + +L++S ++
Sbjct: 39 SNLESCQSSPLEVGNIYNSTSAS-EILSTLDAKYITIIGVIGSSNSSIQDLIDSVGNSNN 97
Query: 147 AASAS 133
AAS++
Sbjct: 98 AASSN 102
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 276 NSLSRCYDX-EQSLEADLLMIIGRHTYSERGLSNLLNSFRSAEGAASASSPVHN 118
+SLSR ++S D+L + S + + +L +SF S + ASAS P +N
Sbjct: 681 SSLSRAPSTSKKSHFEDILGLFASPAPSAQPVDSLASSFASLDFNASASQPSNN 734
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 128 QCTIHLLVTHIEVLLFGLTINNKIIKVV 45
Q + LL H EV+ G+ N +I+KV+
Sbjct: 62 QISACLLDVHCEVMKTGMLFNQQILKVI 89
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 336 RKYSTKETYRS-HRRDCNRIINSLSRCYDXEQSLEADLLMIIGRHTYSERGLSNL 175
+K S K T + H + + IIN Y +++ ADL +G++ + +RG + L
Sbjct: 697 KKNSGKLTIEAEHVSNDSPIINEAPFDYKNQKNFIADLDSDVGKNKFGKRGFNPL 751
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,551
Number of Sequences: 5004
Number of extensions: 38497
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -