Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)              214   3e-56
SB_39164| Best HMM Match : RNB (HMM E-Value=0)                         31   0.76 
SB_40238| Best HMM Match : DUF1030 (HMM E-Value=4.7)                   28   5.4  
SB_22499| Best HMM Match : VAR1 (HMM E-Value=1.6)                      28   5.4  
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 27   7.1  

>SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)
          Length = 480

 Score =  214 bits (523), Expect = 3e-56
 Identities = 94/105 (89%), Positives = 101/105 (96%)
 Frame = +3

Query: 192 VPSMCDDLLSSVDQPLKIAXDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMPSE 371
           VPS+C+DLLSSVDQPLKIA D+  GKDYLLCDYNRDGDSYRSPWSNTYDPPLDDG++PS+
Sbjct: 1   VPSLCEDLLSSVDQPLKIARDKQTGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGAVPSD 60

Query: 372 RLRKLEIDANLAFDQYREMYFEGGVSSVYLWDMDHGFAGVILIKK 506
           RLRKLEIDAN AFDQYREMYFEGGVSSVYLWD+DHGFAGVILIKK
Sbjct: 61  RLRKLEIDANSAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKK 105


>SB_39164| Best HMM Match : RNB (HMM E-Value=0)
          Length = 597

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = +3

Query: 303 DSYRSPWSNTYDPPLDDGSMPSERLRKLEIDANLAFDQYREMYFEGGVSSVYLWDMDHGF 482
           D     WS++  PP+ +G+  SE ++++ + A +A  Q R   FE G  ++ L   +   
Sbjct: 473 DKPNKKWSDSELPPIAEGTDVSEIVKRVNLLAKIA-RQLRRNRFENG--ALRLDQRETEA 529

Query: 483 AGVILIKKA 509
           +GV+L  KA
Sbjct: 530 SGVVLTGKA 538


>SB_40238| Best HMM Match : DUF1030 (HMM E-Value=4.7)
          Length = 692

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 146 QPPHQVQCTIHLLVTHIEVLLFGLTINNKII 54
           QP H+  C+  L + + E+++FG++ NN++I
Sbjct: 192 QPLHRFTCSCLLDLRNNELIVFGVSRNNELI 222


>SB_22499| Best HMM Match : VAR1 (HMM E-Value=1.6)
          Length = 514

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 146 QPPHQVQCTIHLLVTHIEVLLFGLTINNKII 54
           QP H+  C+  L + + E+++FG++ NN++I
Sbjct: 123 QPLHRFTCSCLLDLRNNELIVFGVSRNNELI 153


>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
 Frame = +3

Query: 324 SNTYDPPLDDGSMP-----SERLR-KLEIDANLAFDQYREMYFEGGV---SSVY 458
           S T+D PL DG +P      E LR  L ID+ L  ++ R   F GG+   S+VY
Sbjct: 365 SVTWDSPLFDGGLPIFMYEVELLRGNLVIDSALLRNKNRRFTFNGGIVTPSTVY 418


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = +3

Query: 210 DLLSSVDQPLKIAXDRSNGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGSMP--SERLRK 383
           D ++ V Q L +     NG       Y+   D      +    P + D S+   SE LR 
Sbjct: 406 DKINDVSQFLMMDHRYGNGNGKSEQRYSLSSDHTNHSLTRKLSPSMKDWSIDDVSEFLRS 465

Query: 384 LEIDANLAFDQYREMYFEGGVSSVYLWDMDHGF 482
           +++D      +Y E++ E  +  + L DMD  F
Sbjct: 466 IKLD------KYVEVFRENQIDGMLLSDMDETF 492


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,653,830
Number of Sequences: 59808
Number of extensions: 292871
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)