Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 267 KDYLLCDYNRD 299
           K YL CDY+RD
Sbjct: 41  KLYLFCDYDRD 51


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 324 TKETYRSHRRDCNRIINSLSRCYDXEQSLEADLLMIIGR-HTYSERGLSN 178
           TK      +R   R+I  +S  +     +    L+I+G  HTYSE G S+
Sbjct: 144 TKPLKYGVKRTPRRMIVYVSLVWLGAACISLPPLLIMGNEHTYSETGPSH 193


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +3

Query: 168 NLTDLIDLVPSMC----DDLLSSVDQPLKIAXDRSNGKDYLLCDYNRDGDSYRSPWSNTY 335
           N++D I L PS      D   SS+D+   +  D S GK  ++    +      + W N  
Sbjct: 788 NISD-IALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEMITGVGKATSPNLTKWGNPN 846

Query: 336 DPPLDDG 356
            P +  G
Sbjct: 847 RPIVQSG 853


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 KIAXDRSNGKDYLLCDYNRDGDSYRSPWSNTYD 338
           KI    SN  +Y   +YN   ++Y + ++N Y+
Sbjct: 80  KIISSLSN--NYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 KIAXDRSNGKDYLLCDYNRDGDSYRSPWSNTYD 338
           KI    SN  +Y   +YN   ++Y + ++N Y+
Sbjct: 80  KIISSLSN--NYKYSNYNNYNNNYNNNYNNNYN 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,307
Number of Sequences: 438
Number of extensions: 2529
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)