Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS314F09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10) 104 4e-23
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08) 32 0.33
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 31 0.76
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 31 0.76
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 31 0.76
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 31 0.76
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 31 0.76
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 31 0.76
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
Length = 173
Score = 104 bits (250), Expect = 4e-23
Identities = 52/107 (48%), Positives = 63/107 (58%)
Frame = +3
Query: 111 RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVI 290
R + + HPGYFGK+GMR+FH +N P +NLDK+W+LVSEQTR Y + DG VPVI
Sbjct: 67 RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVI 126
Query: 291 NIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 431
++VKA PKQPVIV VGGACVL A
Sbjct: 127 DVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVGGACVLMA 173
>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 240
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 195 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 58
R+SC + F +C+S T PC D H +H DL+D GA
Sbjct: 52 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 15 CNTTHYRANW 24
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 71 CNTTHYRANW 80
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 639 CNTTHYRANW 648
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 50 CNTTHYRANW 59
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 12 CNTTHYRANW 21
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 52 CNTTHYRANW 61
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 1890 CNTTHYRANW 1899
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 50 CNTTHYRANW 59
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 12 CNTTHYRANW 21
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 44 CNTTHYRANW 53
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 93 CNTTHYRANW 102
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 71 CNTTHYRANW 80
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 82 CNTTHYRANW 91
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 58 CNTTHYRANW 67
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -1
Query: 521 CNTTHYRANW 492
CNTTHYRANW
Sbjct: 82 CNTTHYRANW 91
>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -3
Query: 234 RLMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAH 97
R++ K YL ++ C + + +C+ +G+C CD +H
Sbjct: 85 RVILKTYLCVSYEQGFCKSGNSCTRWHICKGFLEGSCTGTHCDKSH 130
>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 27.1 bits (57), Expect = 9.4
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = +2
Query: 119 HGQVPSWILWQTWY 160
+G+ SW++W+TW+
Sbjct: 342 YGEFSSWLVWRTWF 355
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,457
Number of Sequences: 59808
Number of extensions: 283838
Number of successful extensions: 2153
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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