Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    31   0.14 
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   1.3  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   6.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 108 PQHFLGLAGIPRRI 149
           PQHFLGL G+PRRI
Sbjct: 433 PQHFLGLNGMPRRI 446


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 296 SHHQXNDIKIYHQXNIHIMNYQFXXVVNWKXLXRXLXSRGGPXPNSPY 439
           S H   D+ I H  ++ I N+Q      WK     L S  GP PN+ +
Sbjct: 154 SLHDSTDLSITHHPHLPI-NHQGN---TWKHANESLQSNQGPVPNTKF 197


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 491 PSPDVVKRRPVNCNSTPYRANWVPGPPSXEXFXPAXSSLQ 372
           P+P V  +RP    S+P  +  VP         PA  S+Q
Sbjct: 427 PTPQVSPKRPTYSRSSPLPSASVPALGDGSPDPPAAPSIQ 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,211
Number of Sequences: 5004
Number of extensions: 25106
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)