Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   118   5e-28
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    30   0.24 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   3.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   5.2  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   9.0  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  118 bits (284), Expect = 5e-28
 Identities = 53/85 (62%), Positives = 64/85 (75%)
 Frame = +3

Query: 3   AKDYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEV 182
           ++DYGV +ED G   RGLF+ID KG+LRQIT+NDLPVGRSVDE LRL+ AFQ+ + HGEV
Sbjct: 109 SRDYGVLIEDAGVAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEV 168

Query: 183 CPAGWKPGQDTIIPNPSEKKKYFEK 257
           CPA W  G DTI  +    +KYF K
Sbjct: 169 CPANWHKGSDTI--DTKNPEKYFSK 191


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 462 SSELNALSHKWCSTFYGI*APHHEYSYLTLQTINNNKLLDFI--STVQKIVPYTYS 301
           SS  N LSH   + F        +Y Y TLQ+  N  + D I   T+ K++P+ +S
Sbjct: 392 SSVPNHLSHMSITRFEDKTKKSRQYRYFTLQSQLNRLIRDGIPAETISKLLPHVHS 447


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 377 PSKPLIIINYWISYQQYRK*F 315
           PS  L+I N WISY+  +K F
Sbjct: 251 PSGTLVISNGWISYRHLQKAF 271


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 66   QL*TILLKYGPDPPNKPRS 10
            QL T LL Y P+PP+KP +
Sbjct: 1101 QLVTELLGYLPEPPSKPNA 1119


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 224 WYNCVLTRFPACWANFTMIISILE 153
           WY+ +LT   A + + T+ +SIL+
Sbjct: 7   WYSLLLTEVAAYFTSTTLFVSILK 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,764
Number of Sequences: 5004
Number of extensions: 45790
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)