Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...   104   4e-23
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700...   102   2e-22
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    43   1e-04
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080     34   0.060
09_01_0137 + 2063881-2063934,2066218-2066448,2066656-2067249,206...    29   3.0  
11_06_0736 - 26784531-26785814                                         27   6.9  

>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score =  104 bits (250), Expect = 4e-23
 Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   AKDYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYT-DNHGE 179
           +K +GV + D G  LRGLFIID +G+++  T+N+L +GRSVDET+R +QA QY  DN  E
Sbjct: 243 SKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDE 302

Query: 180 VCPAGWKPGQDTIIPNPSEKKKYFEKV 260
           VCPAGWKPG  ++ P+P   K+YF  +
Sbjct: 303 VCPAGWKPGDKSMKPDPKGSKEYFAAI 329


>04_03_0889 +
           20568984-20569037,20569271-20569345,20569981-20570088,
           20572066-20572179,20572393-20572509
          Length = 155

 Score =  102 bits (245), Expect = 2e-22
 Identities = 44/83 (53%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
 Frame = +3

Query: 15  GVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPA 191
           GV ++ +G  LRGLFIID +G+++  T+N+L +GRSVDETLR +QA QY  +N  EVCPA
Sbjct: 73  GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPA 132

Query: 192 GWKPGQDTIIPNPSEKKKYFEKV 260
           GWKPG+ ++ P+P + K+YF  +
Sbjct: 133 GWKPGEKSMKPDPKDSKEYFASI 155


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 111 VGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIP 224
           VGR++DE +R V A Q    H    P  WKPG+  +IP
Sbjct: 184 VGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIP 221


>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
          Length = 220

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 114 GRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIP 224
           GR++ E LR   A      H    P  WKPG+  +IP
Sbjct: 150 GRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIP 186


>09_01_0137 +
           2063881-2063934,2066218-2066448,2066656-2067249,
           2067980-2068639,2068910-2069164
          Length = 597

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -1

Query: 452 LMHYHINGVAHFTASRH---RIMNIAILPSKPLIIINYW 345
           ++ Y I G+A  T  R+    +++IAILP++ ++ + +W
Sbjct: 325 IISYDIEGIAECTQIRYFASLLLDIAILPTEIMLTVRHW 363


>11_06_0736 - 26784531-26785814
          Length = 427

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 111 VGRSVDETLRLVQAFQYTDNHGEVCPAGW 197
           +GR+  E+ R+V A  YTD   EV P GW
Sbjct: 340 LGRAWGESSRVVYA--YTDMSKEVVPVGW 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,206
Number of Sequences: 37544
Number of extensions: 250896
Number of successful extensions: 510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)