Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.4  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   4.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 266 FSNLFKIFLLLRRIWYNCVLTRFPAC 189
           F+ L  +F+L RR+ Y    T  P C
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTYIPTC 256


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -3

Query: 240 SSQKDLV*LCPDQVSSLLGKLHHDYQYIGMLEQVSMFHQLNVLLANH 100
           + + DL   C   ++S    + HD     +L+ +    QLN++ ++H
Sbjct: 32  NGKXDLFARCMGGINSRNMDIEHDPGLAAVLQYLIRSGQLNIISSDH 78


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 280 YYYQNQKGVCIGNYFLYC 333
           Y YQ      +G+YF  C
Sbjct: 441 YIYQKMVADVVGDYFFIC 458


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 462 SSELNALSHKWCSTFYGI*APHHEY 388
           S   N L  +  S   G  +PHHEY
Sbjct: 505 SGSRNPLLQEHDSVMLGEISPHHEY 529


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 280 YYYQNQKGVCIGNYFLYC 333
           Y YQ      +G+YF  C
Sbjct: 441 YIYQKMVADVVGDYFFIC 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,312
Number of Sequences: 438
Number of extensions: 3283
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)