Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS314F07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat...   103   7e-23
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...   103   7e-23
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati...    33   0.15 
At3g45700.1 68416.m04939 proton-dependent oligopeptide transport...    28   3.3  
At5g26160.1 68418.m03111 expressed protein                             28   4.4  
At2g27505.1 68415.m03326 expressed protein ; expression supporte...    28   4.4  

>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
           very strong similarity to SP|Q96291 2-cys peroxiredoxin
           BAS1, chloroplast precursor {Arabidopsis thaliana};
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 273

 Score =  103 bits (247), Expect = 7e-23
 Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   AKDYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYT-DNHGE 179
           +K +GV + D G  LRGLFIID +G+++  T+N+L +GRSVDET+R +QA QY  +N  E
Sbjct: 187 SKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDE 246

Query: 180 VCPAGWKPGQDTIIPNPSEKKKYFEKV 260
           VCPAGWKPG+ ++ P+P   K+YF  +
Sbjct: 247 VCPAGWKPGEKSMKPDPKLSKEYFSAI 273


>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score =  103 bits (247), Expect = 7e-23
 Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   AKDYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQY-TDNHGE 179
           +K +GV + D G  LRGLFIID +G+++  T+N+L +GRSVDET+R +QA QY  +N  E
Sbjct: 180 SKSFGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDE 239

Query: 180 VCPAGWKPGQDTIIPNPSEKKKYFEKV 260
           VCPAGWKPG+ ++ P+P   K+YF  +
Sbjct: 240 VCPAGWKPGEKSMKPDPKLSKEYFSAI 266


>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
           identical to peroxiredoxin (Rehydrin homolog)
           [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family
          Length = 216

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
 Frame = +3

Query: 48  RGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGE--VCPAGWKPGQDTII 221
           R L I+     ++   +     GR++DE LR + +      H      P  WKP Q  +I
Sbjct: 122 RALHIVGPDSKIKLSFLYPSTTGRNMDEVLRALDSLLMASKHNNKIATPVNWKPDQPVVI 181

Query: 222 P---NPSEKKKYF 251
               +  E KK F
Sbjct: 182 SPAVSDEEAKKMF 194


>At3g45700.1 68416.m04939 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 548

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 422 HFTASRHRIMNIAILPSKPLIIINYWISYQQYRK 321
           HF  S   +  IA++     II+N W +Y  Y+K
Sbjct: 351 HFKVSAGSMQVIALVSGCVFIILNNWTTYPMYQK 384


>At5g26160.1 68418.m03111 expressed protein 
          Length = 1058

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 6   KDYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDN 170
           KD  +     GHTLR    +  + +LR  ++N+ P+G S+   L L+Q  +  D+
Sbjct: 794 KDQDLASNGKGHTLRNKLTLALQVLLRDPSLNNEPIGASM---LALIQVERSLDS 845


>At2g27505.1 68415.m03326 expressed protein ; expression supported
           by MPSS
          Length = 282

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 177 HHDYQYIGMLEQVSMFHQLNVLLANHSL*FVVEFL 73
           H D +++  L  + M H  N+L  NH +  +++ L
Sbjct: 130 HEDPKFVVSLPSLKMMHLENILYKNHGVLLIIKML 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,294,500
Number of Sequences: 28952
Number of extensions: 219381
Number of successful extensions: 426
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)